Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00207 ATGGGAGGCGACAGTGCCGTGGCAGAAACCAATGAACCTACCTGCGGTGACAAAGTCACCGTCAATATCCGAAGTTCTAACGGGTCAAAGTTTTCTGTTCAGATTAGCCTCGATTCAACCGTTAGATCTTTCAAAGACATCGTAGCTCAGAACTGCGATATTCCAGCTGATCAACAACGTCTGATTTACAAGGGTCGGATCTTGAAAGACGAGCAGACCCTACAAAGCTACGGTTTGGAGGCTGATCATACTGTGCATTTGGTTCGTGGTTTTGCTGCTGCAGCTCCATCAGGCAACCCAACTGCAGGAGCCAACCCTGCAGGTACAGCTACAACTCCTAACAGTACTAGAAGTACTGTATCTAATGAAGGTGTGAGGTTAGGAGTCCCTGATCGTGGAACATCACTATTTCCTGGACTTGGTTTAAGTGGTATTAGCACTGGTGATAACTTATTTGGATCTGGGCTGCCAGAGTTTGAGCAAGTGCAGCAACAGTTGACTCAGAACCCTAACATGATGAGGGAAATAATGAATATGCCTGCGATTCAAAATCTCATGAATAATCCTGAAGTAATGCGAAATTTGATTATGAATAATCCTCAGATGCGGGATATTATTGATCGGAACCCTGAGCTAGCTCACGTACTTAATGATCCTAATACTCTCCGCCAGACACTAGAAGCTGCTAGAAATCCCGAACTAATGCGTGAGATGATGCGCAATACTGATAGAGCTATGAGCAATATTGAATCTTCTCCTGAAGGATTCAACATGCTGAGGCGCATGTATGAGAATGTTCAAGAGCCATTCCTAAATGCTACTACCATAGCTAATCAAGCAAATGGCAACACTAACCCTTTTGCTGCTCTTTTGGGAAACCAAAGTGGCCAGACCAGAGATCAAACAACAAATCCATCAACCACTGGTTCAGAAGCAAATACTGGTTGTCCTGCTCCCAATACCAATCCACTTCCAAATCCCTGGAGCTCTACAGGCCCAACTGGAGGTGCTCAGACCAACAGGTCAACATCGTTGGGGGATACTAGGCAACAAGCACCCCCTGGTTTAGGGATTGGTCTTCCTGATTCTGAAGGCATGATGGGTGCCATGCAAGATCCTACGCTACTGACTCAGTTCATGCAAAATCCAGCAGTTTCACAGATGATGCAAAGCCTCCTTTCAAATCCCCATTACATGAACCAGATTCTTGGTATGAATCCTCAGCTTAGCAGTATGCTTGATTCTAACTCTCAATGGAGAGAAATGATGCAAAATCCAGAAATGCTTCGTCAATTAACATCTCCTGAGACAATGCAGCAACTCTTGTCGTTTCAGCAAGCTTTACTTTCTCAAGTTAATCCAGGACAGCGTGCACAAGATCCAGGTCAGACTGGCGGAGGTGCAGGTATGCAATCGTTTTAA 1422 0.4508 MGGDSAVAETNEPTCGDKVTVNIRSSNGSKFSVQISLDSTVRSFKDIVAQNCDIPADQQRLIYKGRILKDEQTLQSYGLEADHTVHLVRGFAAAAPSGNPTAGANPAGTATTPNSTRSTVSNEGVRLGVPDRGTSLFPGLGLSGISTGDNLFGSGLPEFEQVQQQLTQNPNMMREIMNMPAIQNLMNNPEVMRNLIMNNPQMRDIIDRNPELAHVLNDPNTLRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTIANQANGNTNPFAALLGNQSGQTRDQTTNPSTTGSEANTGCPAPNTNPLPNPWSSTGPTGGAQTNRSTSLGDTRQQAPPGLGIGLPDSEGMMGAMQDPTLLTQFMQNPAVSQMMQSLLSNPHYMNQILGMNPQLSSMLDSNSQWREMMQNPEMLRQLTSPETMQQLLSFQQALLSQVNPGQRAQDPGQTGGGAGMQSF* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00207 473 FunFam Ubiquitin domain-containing protein DSK2b 196 252 - -
Pte11g00207 473 Gene3D - 15 99 - -
Pte11g00207 473 MobiDBLite consensus disorder prediction 284 363 - -
Pte11g00207 473 MobiDBLite consensus disorder prediction 284 319 - -
Pte11g00207 473 MobiDBLite consensus disorder prediction 452 473 - -
Pte11g00207 473 CDD Ubl_Dsk2p_like 19 91 - -
Pte11g00207 473 Gene3D - 194 252 - -
Pte11g00207 473 SUPERFAMILY Ubiquitin-like 17 106 IPR029071 -
Pte11g00207 473 ProSiteProfiles Ubiquitin domain profile. 19 88 IPR000626 GO:0005515
Pte11g00207 473 MobiDBLite consensus disorder prediction 327 350 - -
Pte11g00207 473 MobiDBLite consensus disorder prediction 97 122 - -
Pte11g00207 473 SMART ubq_7 19 90 IPR000626 GO:0005515
Pte11g00207 473 SMART CBM 149 186 IPR006636 -
Pte11g00207 473 SMART CBM 406 441 IPR006636 -
Pte11g00207 473 SMART CBM 199 238 IPR006636 -
Pte11g00207 473 SMART CBM 363 402 IPR006636 -
Pte11g00207 473 MobiDBLite consensus disorder prediction 102 122 - -
Pte11g00207 473 PANTHER UBIQUILIN 19 465 IPR015496 -
Pte11g00207 473 FunFam Ubiquitin domain-containing protein DSK2b 16 102 - -
Pte11g00207 473 Pfam Ubiquitin family 21 88 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00207 Pte-Chr11 2377979 2382875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00207 23 88 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 31.818 1.12e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00207 K04523 - qsu:112016136 655.981