Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00176 ATGGAAGAGTTGCAGCAAAAGCAACAAGCTTCGACGTTGGAGGTCAATAGCCTTTCTCCTCAACTCCAGCAGCAGTCTCAGTCGCAGAGCTGCTTGAACCGGTCTTTCAAATGCGCAGAGGAGGTCAAGGACGTGGATCAGTGCCGTAGTATTGGAAATAGAGAGGATTCTCAGCTCGTAGGAATTCCCGTGACGGTTGCTGGTGATGCTGACTTGATGAAGACGGATGATGGAAGCTTGACTCATATAGAAGTCAAAGTTGACGTGAAGGTCCCCGACACTAGTCTGGTAAAGCGCAAGCGTGGTCGGCCGCCAAAGGGTCAGGCCAGGACTTCGCCGCCGGTGAGGAAACAGAAGGAAGAGGAAGACGTCTGTTTTATTTGCTTCGATGGTGGGAGTCTCGTTCTATGTGATCGCCGGGGCTGTCCTAAGGCATACCATCCAGCATGCATTAAGCGAGATGAGGCATTCTTCCGCTCAAGAGCAAAATGGAATTGTGGTTGGCATATTTGCAGCATATGTCAGAAGGCTTCTCATTACATGTGTTATACATGTACATATTCGTTATGTAAGGGATGCACAAAAGACGTTGACTATCTCTGTGTAAGAGGGAACTTTGGTTTTTGTGGGACATGCATGAGAACTATAATGCTTATTGAGAATAATGCTCAAGGAACCAAGGAAAAGTGTGAAGTAGATTTTGACGACAAAAGCAGTTGGGAGTATCTATTCAAGGTTTATTGGATGTATTTGAAAAGAAAACTATCTTTAACATTAGATGAGCTCACTCATGCTCAAAGTCCATGGAAAGGAGATCTTCTAATGGGTCCAAATGGTGAATCTTCACGTGTACTTAATCATAGCAGAGCCAAGAGATTTTCAATTCCTGGAAACTCCAGTTTATATATTGAAACCACCGATTATAAAAGGAGAAAGACTTCAGATGATTCAAATTTTATCAATCAAGAGAACTCTAAATCTATGGGAGTATCAGGAATTGATAAAAAAATGACATGGGCATCTGACAAGCTGTTGGAGTTTGTTGGACATATGAAAAATGGGGACACATCTGCCCTATCACAATTTGATGTGCAGGCCCTACTATTGGAATATATTAAGAAGAACAATCTTCGGGATCCTCTTCAGCAGTGTCAAATTATTTGTGATTCAAGGCTAATAAATTTGTTTGGAAAAGCATGTTTGGGCCACATTGAAATGTTGAAGCTTCTTGAGTCACATTTTTTCATTGGAGAGAATACTTCTGCAGAAGATAGTGCTAACCCGAGAGTTCTTGATGCTGTTACTGGACAAGGGGAGACTAGTGGACTTCCGGAGAACAAACTGATAATTGGTAGTGATAAGAGGAATAAGTCCCGCAAAAAGATTGTTCTGCAAGCTCCAGAGAATGATCTAAATGCATTTGCAGCGATTAATAGTCACAATATTAAGTTAATTTATTTGTGTCGCAATCAGATGGAGGATTTAATTAAAGATGCTGACCAATTCCATCAGAAGGTTGTCGGTTCGATTGTGAGGGTTAAAATTCCCAATGGTGATCACAAGCCAGATATGTATAGGCTTGTCCAAGTTGTAGGCACAAGCAAGGTAGATAAACAGTACACCATTGGTACAAGAACAACTGACTTGATGCTTGAAGTGATAAATTTAAATAAGAAAGAGGTCATTTCAATTGGAGGGATCTCGAATCAGGAATTCTCTGAGGATGAATGTAGACGTTTTCGCCAGAGCATAAAATGTGGACTGTCCAAGTGCCTGACTGTGGGTGAAATTCAGGAAAAGGCGATGACATTTCAGGCTATGAGAATTGACAGTTTACTGGAAGCAGAAATTTTGCGGCTTAATCATCTTCGTGATAGAGCGAGCGAGAAGGGGCACAAAAAGGAATATCCTTCTTGTATAATCAAGCTTGAAAAAGGACTGAATTGCTATTATTGGAAAAAGAATGTCACACCTTGTTACGGCTGTCATATACTTGATTGTTTGCAGTCCTAG 2013 0.4138 MEELQQKQQASTLEVNSLSPQLQQQSQSQSCLNRSFKCAEEVKDVDQCRSIGNREDSQLVGIPVTVAGDADLMKTDDGSLTHIEVKVDVKVPDTSLVKRKRGRPPKGQARTSPPVRKQKEEEDVCFICFDGGSLVLCDRRGCPKAYHPACIKRDEAFFRSRAKWNCGWHICSICQKASHYMCYTCTYSLCKGCTKDVDYLCVRGNFGFCGTCMRTIMLIENNAQGTKEKCEVDFDDKSSWEYLFKVYWMYLKRKLSLTLDELTHAQSPWKGDLLMGPNGESSRVLNHSRAKRFSIPGNSSLYIETTDYKRRKTSDDSNFINQENSKSMGVSGIDKKMTWASDKLLEFVGHMKNGDTSALSQFDVQALLLEYIKKNNLRDPLQQCQIICDSRLINLFGKACLGHIEMLKLLESHFFIGENTSAEDSANPRVLDAVTGQGETSGLPENKLIIGSDKRNKSRKKIVLQAPENDLNAFAAINSHNIKLIYLCRNQMEDLIKDADQFHQKVVGSIVRVKIPNGDHKPDMYRLVQVVGTSKVDKQYTIGTRTTDLMLEVINLNKKEVISIGGISNQEFSEDECRRFRQSIKCGLSKCLTVGEIQEKAMTFQAMRIDSLLEAEILRLNHLRDRASEKGHKKEYPSCIIKLEKGLNCYYWKKNVTPCYGCHILDCLQS* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00176 670 Pfam SWIB/MDM2 domain 341 414 IPR003121 -
Pte11g00176 670 ProSitePatterns Zinc finger PHD-type signature. 125 185 IPR019786 -
Pte11g00176 670 SUPERFAMILY SWIB/MDM2 domain 331 415 IPR036885 -
Pte11g00176 670 SUPERFAMILY FYVE/PHD zinc finger 97 169 IPR011011 -
Pte11g00176 670 MobiDBLite consensus disorder prediction 95 115 - -
Pte11g00176 670 CDD PHD5_NSD 124 169 - -
Pte11g00176 670 MobiDBLite consensus disorder prediction 1 27 - -
Pte11g00176 670 Gene3D SWIB/MDM2 domain 331 424 IPR036885 -
Pte11g00176 670 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 214 IPR013083 -
Pte11g00176 670 ProSiteProfiles SWIB/MDM2 domain profile. 333 416 IPR003121 -
Pte11g00176 670 FunFam Zinc finger CCCH domain-containing protein 19 114 214 - -
Pte11g00176 670 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 39 644 - -
Pte11g00176 670 SMART rtf1 476 586 IPR004343 GO:0003677
Pte11g00176 670 ProSiteProfiles Plus3 domain profile. 476 609 IPR004343 GO:0003677
Pte11g00176 670 ProSiteProfiles Zinc finger PHD-type profile. 122 188 IPR019787 -
Pte11g00176 670 SMART PHD_3 124 170 IPR001965 -
Pte11g00176 670 Pfam Plus-3 domain 481 584 IPR004343 GO:0003677
Pte11g00176 670 SMART swib_2 333 419 IPR019835 -
Pte11g00176 670 CDD SWIB-MDM2_like 339 414 - -
Pte11g00176 670 Gene3D - 477 606 IPR036128 GO:0003677
Pte11g00176 670 SUPERFAMILY Plus3-like 477 605 IPR036128 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00176 Pte-Chr11 2181509 2185223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00176 122 210 PHD Transcription Factor Family AT5G36670 33.663 8.29e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI or SNF-BAF60b Pte11g00176 Plus-3 3.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00176 - - zju:107424392 765.377