Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00172 ATGGAATGCGTAGAAGCGGCCTTGAAAACCAGTTTTAGAAAGGAAATGGCAATCAAAACAAGCTCACAGACAATTCTTGAGGATATATGTGTTTTGAATGCCCAGAATGGTGGACCTTGTGATGACTTCTTCGTGGATGACCTCCTAGACTTCTCAAACCAAGAAGCTCTCCTTGAGGAACAAGTAGACAAAGAGGAAAACAAAGTTTTCTCTGTCCCCGTTTCTGATCAAAAGGACACGCAGTGGAATGGAATTTCACTTCCATGTTCCACTTTCACAGCCACAGACGACTTTGGGTCTCTACCCAACAACGAACTCAGCGTTCCGGCGGAGGAACTAGCAGACTTAGAATGGTTGTCGCATTTTGTAGAGGATTCCTTCTCGGAACAATCTGCTTCTGTCGCCTACTCTGCTGGAACATTTGCAGAGAAACCAAAGCAACATGCACTTGCAGAGGAAAAAATTCCTGAACTGGAAAACGCCCTTGAAGTCTCGAATAAGACTTGTTTCGACTCTCCGGTTCCGGCAAAAGCCAGAAGCAAACGAATCAGAACTGTTGTTCGGGTTTGGTCTCTTGGGTCTCCTTCCCTCACCGAGTCATCCTCTAGTCCGACCTCTTCCTCCTCCTCCTCCTCCCCTCCTGGCCCGTGGCTTATGTACTCAAGTAGCACCACGAACATCACCGAACCGGTTTCCACCTCCGAAGCCACCATGTCATTGGCAAAGAAGCCGAAGAAAAAAACGGCGTCTAACTGGTCAGGGCTCAGCAGTGTTGGTGGTGGAGGCCAAGCACCACGGCGATGCAGCCACTGCGGCGTACAGAAGACACCGCAGTGGAGAGCGGGTCCCCTGGGAGCCAAAACCCTTTGTAACGCATGTGGGGTAAGATACAAATCGGGTCGACTCTTGCCCGAATATAGACCGGCATGCAGCCCCACGTTTTCGAGCGAAAATCACTCAAACCATCACCGTAAAGTGCTGGAGATGCGGCGGAAGAAGGAGCTGGAGTCGGGACTTGACTCCGGTCTAACTGCTCCGGCAGTCCCTAGTTTTTGA 1056 0.5038 MECVEAALKTSFRKEMAIKTSSQTILEDICVLNAQNGGPCDDFFVDDLLDFSNQEALLEEQVDKEENKVFSVPVSDQKDTQWNGISLPCSTFTATDDFGSLPNNELSVPAEELADLEWLSHFVEDSFSEQSASVAYSAGTFAEKPKQHALAEEKIPELENALEVSNKTCFDSPVPAKARSKRIRTVVRVWSLGSPSLTESSSSPTSSSSSSSPPGPWLMYSSSTTNITEPVSTSEATMSLAKKPKKKTASNWSGLSSVGGGGQAPRRCSHCGVQKTPQWRAGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSENHSNHHRKVLEMRRKKELESGLDSGLTAPAVPSF* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00172 351 MobiDBLite consensus disorder prediction 194 267 - -
Pte11g00172 351 ProSitePatterns GATA-type zinc finger domain. 268 293 IPR000679 GO:0006355|GO:0043565
Pte11g00172 351 SMART GATA_3 262 316 IPR000679 GO:0006355|GO:0043565
Pte11g00172 351 FunFam GATA transcription factor 260 341 - -
Pte11g00172 351 ProSiteProfiles GATA-type zinc finger domain profile. 262 298 IPR000679 GO:0006355|GO:0043565
Pte11g00172 351 Coils Coil 48 68 - -
Pte11g00172 351 PANTHER GATA TRANSCRIPTION FACTOR 32 336 - -
Pte11g00172 351 MobiDBLite consensus disorder prediction 194 258 - -
Pte11g00172 351 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 263 324 - -
Pte11g00172 351 CDD ZnF_GATA 267 315 IPR000679 GO:0006355|GO:0043565
Pte11g00172 351 Pfam GATA zinc finger 268 302 IPR000679 GO:0006355|GO:0043565
Pte11g00172 351 PIRSF Txn_fac_GATA_plant 1 346 IPR016679 GO:0003677|GO:0005634|GO:0045893
Pte11g00172 351 Gene3D - 261 335 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00172 Pte-Chr11 2076092 2077950 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00172 5 352 C2C2-Gata Transcription Factor Family AT5G66320 55.775 2.59e-93 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pte11g00172 GATA 2.1e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00172 - - qsa:O6P43_033646 380.178