Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00143 ATGACGACTCGAATAGCACCTGGAGTGGGAGCTAATTTGCTAGGCCAGCATTCATCCGAGAGGAATCAAGACGCTACTGCTTACGTCGGCAATCTCGACCCTCAGGTGGGCGAGGAGTTGCTGTGGGAGCTATTCGTTCAGGCCGGTCCTGTTGTTAATGTCTATGTTCCGAAGGACAGAGTCAGCAACCAACATCAGGGCTATGGATTCGTCGAATTCCGTAGCGAAGAAGATGCTGACTATGCAATCAAGGTTCTTAATATGATTAAACTTTATGGAAAGCCTATACGTGTAAACAAGGCATCTCAAGATAAAAAAAGCTTGGATGTGGGGGCAAATCTTTTTATAGGGAATCTTGATCCTGATGTAGATGAGAAGCTACTATATGATACGTTCAGCGCATTTGGAGTGATTGTCACAAATCCAAAGATTATGCGAGATCCTGAAACTGGAAATTCTCGCGGATTTGGTTTCATTAGTTATGATTATTTTGAGGCGTCGGATGCAGCTATTGAGGCAATGAATGGGCAATATCTTTGCAACCGTCAGATAACAGTGTCATATGCATACAAGAAAGATACCAAGGGGGAGCGCCACGGTACTCCGGCTGAGAGAGTTTTGGCTGCAAGCAATCCAAATGCACAGAAAAGCAGGCCTCATACTCTATTTGCCAGTGGACCTCCAGCTCTTCCTAATGTCCCGAACGGTGTCATGTCTACCCCAGTGCCTCCTCGACCCTTTGCAAATGGGGTTGCTCCTAGTCCTCTCCGACCACCACCACCTCCACAAGGTGCAGTCTTCCCTCCAATGCAGGTAGCTGGACAGCCTGCGTGGCAGCAACCACAATTAGGTCAAGGCATGCCACCTCCTATCATGCCTCCTCCGATGCATCAGTTTAGGCCGCCTCAGCAAGGTATGCCTCCACCCCCACCTCCCCAGGTTATTCCTGGTCCTCCAAGGCCTCTTCCACCACCAGCGGCAATGGCAGCAACACCATCTTTGTGGAGACCCCCTCCACCACCTCAGCATTTTCAGTCATCCATGCTACCACCTCCGCATCCCCCTTCTACATGA 1074 0.4963 MTTRIAPGVGANLLGQHSSERNQDATAYVGNLDPQVGEELLWELFVQAGPVVNVYVPKDRVSNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDYFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPNAQKSRPHTLFASGPPALPNVPNGVMSTPVPPRPFANGVAPSPLRPPPPPQGAVFPPMQVAGQPAWQQPQLGQGMPPPIMPPPMHQFRPPQQGMPPPPPPQVIPGPPRPLPPPAAMAATPSLWRPPPPPQHFQSSMLPPPHPPST* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00143 357 Gene3D - 112 200 IPR012677 -
Pte11g00143 357 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Pte11g00143 357 CDD RRM1_SF3B4 28 100 IPR034158 -
Pte11g00143 357 FunFam Splicing factor 3b subunit 4 16 109 - -
Pte11g00143 357 CDD RRM2_SF3B4 111 193 IPR034159 -
Pte11g00143 357 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Pte11g00143 357 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Pte11g00143 357 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Pte11g00143 357 MobiDBLite consensus disorder prediction 250 267 - -
Pte11g00143 357 SUPERFAMILY RNA-binding domain, RBD 25 193 IPR035979 GO:0003676
Pte11g00143 357 MobiDBLite consensus disorder prediction 250 270 - -
Pte11g00143 357 FunFam splicing factor 3B subunit 4 110 200 - -
Pte11g00143 357 PANTHER SPLICING FACTOR 3B SUBUNIT 4 14 339 - -
Pte11g00143 357 MobiDBLite consensus disorder prediction 297 357 - -
Pte11g00143 357 Gene3D - 16 111 IPR012677 -
Pte11g00143 357 SMART rrm1_1 113 187 IPR000504 GO:0003723
Pte11g00143 357 SMART rrm1_1 26 99 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00143 Pte-Chr11 1862194 1866957 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00143 18 198 Eukaryotic Initiation Factors Gene Family AT4G34110 28.788 7.27e-18 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00143 K12831 - vvi:100251324 525.013