Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00141 ATGCCAGTTGATTTAGATATCTCCACTACAGCTTCAGGTGAAGCTAGCGTGTCTTCCTCTGGCAATCAGACGGACCCTCCTAATACTAAGTCCACAGCCAAGAGAAAGAGAAACCAACCCGGAATGCCCGATCCAGATGCAGAGGTTATTGCTCTATCACCTAAGACCCTATTGGCGACAAACCGATTCGTTTGCGAAATTTGCAACAAAGGGTTTCAGAGGGATCAAAATCTGCAGCTGCATCGTCGAGGTCACAATCTTCCTTGGAAATTGAGGCAGAGGTCAGGCAAGGAAGTGAAGAAAAGGGTGTATGTTTGTCCTGAGCCAACTTGTGTTCACCATGACCCGTCTAGAGCTCTGGGTGATCTTACTGGGATAAAGAAACATTTTTGTCGAAAACATGGTGAGAAGAAGTGGAAATGTGATAAGTGTTCCAAGAAATACGCTGTTCAGTCAGATTGGAAAGCTCATTCTAAGGTTTGTGGAACCAGGGAGTATAAATGCGATTGTGGAACTTTGTTTTCAAGGAGGGATAGCTTTATCACACACAGGGCGTTTTGCGATGCTTTAGCAGAGGAAAGTGCGAAGACTGGTTCTCAGACTCCTCCACCTAATATAACCCCGGCAATTGTGCATCCGAATCCCGAGTGCAATCCGAAAGCTGCGAACTGCGATCCTGCGCCTCAAGCAGCGCCACCTCCACTTCCTCCTGCGGCACCCCCATCTCCTCCTCTGTCAACTACGGTCGTGCCTCCTATTTTACCGGCACAAATTCCAGAGTTGCAAGAGAATTCCCCCCAGATTTTAGAAGAAGCACAGGCCAAAACTGCTGTAAATGGTAGCTGCAGCAGTAGTAATAGCTCTGGCAGCGCCGGTGGTGCGAGCAGTAGTGTGTTTGCTAGTTTGTTTGCTTCAACGACTGCATATGAAAATTTACAATCATCTCAGACTCCTAGTTTCACTGATCTAATCAGGGCCATGGCACGGCCTGACCGCCCCCAAACAGATCTAATAGGATCTTCACATGCGGAACCTATTTCTCTCTGCCTCTCTACCAACTACGGGTCGTCTATTTTTGCCACAGGAGGGCAAGAGCGGAGGCAGTATGCACCGCCGCCACAACCTGCTATGTCTGCCACTGCATTACTTCAGAAGGCGGCTCAAATGGGTGCAGCAGCTTCAAGTGCTTCTCTACTACGTGGTTTGGGCATAGTGTCATCTTCCACATCATCTGAACAACAAGACAATTTGCAATGGGGTCAACAACAAGTAGAAACAGACAGGACTTCAATTCCTGCTGGGCTTGGTCTTGGGCTGCCTTGCGATAGTAATTCTGGATTAAAGGAACTAATGATGGGAACTCCAGTATTTGGACCAAAGCAAACTACTCTGGATTTTCTGGGACTGGGGATGGCTGCAGGTGGCACCCCTAGTGATGGGCTATCAGCACTGATTACATCAGTTGGTGGCGGTCTTGATGTTGCGGCAGCAGCATCTTTTGTTGGCGAAGAATTCTCTGGCAAAGATATTGGGAGGAGCTCGTGA 1545 0.4835 MPVDLDISTTASGEASVSSSGNQTDPPNTKSTAKRKRNQPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSGKEVKKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKVCGTREYKCDCGTLFSRRDSFITHRAFCDALAEESAKTGSQTPPPNITPAIVHPNPECNPKAANCDPAPQAAPPPLPPAAPPSPPLSTTVVPPILPAQIPELQENSPQILEEAQAKTAVNGSCSSSNSSGSAGGASSSVFASLFASTTAYENLQSSQTPSFTDLIRAMARPDRPQTDLIGSSHAEPISLCLSTNYGSSIFATGGQERRQYAPPPQPAMSATALLQKAAQMGAAASSASLLRGLGIVSSSTSSEQQDNLQWGQQQVETDRTSIPAGLGLGLPCDSNSGLKELMMGTPVFGPKQTTLDFLGLGMAAGGTPSDGLSALITSVGGGLDVAAAASFVGEEFSGKDIGRSS* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00141 514 SMART c2h2final6 104 134 IPR013087 -
Pte11g00141 514 SMART c2h2final6 63 85 IPR013087 -
Pte11g00141 514 SMART c2h2final6 139 159 IPR013087 -
Pte11g00141 514 SUPERFAMILY beta-beta-alpha zinc fingers 62 159 IPR036236 -
Pte11g00141 514 Gene3D Classic Zinc Finger 43 108 - -
Pte11g00141 514 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Pte11g00141 514 MobiDBLite consensus disorder prediction 226 250 - -
Pte11g00141 514 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 475 IPR031140 -
Pte11g00141 514 MobiDBLite consensus disorder prediction 1 46 - -
Pte11g00141 514 FunFam protein indeterminate-domain 5, chloroplastic-like 117 196 - -
Pte11g00141 514 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 85 IPR013087 -
Pte11g00141 514 MobiDBLite consensus disorder prediction 217 251 - -
Pte11g00141 514 Gene3D Classic Zinc Finger 117 197 - -
Pte11g00141 514 FunFam protein indeterminate-domain 12-like 42 110 - -
Pte11g00141 514 MobiDBLite consensus disorder prediction 9 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00141 Pte-Chr11 1817394 1819884 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00141 1 515 IDZ Gene Family AT5G66730 59.665 0.0 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte11g00141 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00141 K25869 - tcc:18610967 702.975