Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00106 ATGTCATCGTCGAATTCGCCGTGCGCTGCGTGCAAGTGTCTGAGACGGAAGTGCACACAAGAGTGCGTGTTCGCACCTTATTTCCCTCCGGACAATCCACAAAGGTTTGCCAATGTACACAAGGTGTTCGGAGCTAGCAACGTAGCAAAGCTTCTCAACGAGTTAAGCGCTGCTCAGCGGGATGACGCTGTTAAATCATTGGCTTACGAAGCTGAGGCGCGTCTTAGAGATCCTGTGTACGGTTGTGTGGGTCTCATCTCAATACTTCAGCACAAGCTTAAACAGATGCAGAGTGAACTTGATAATGCAAAGAAGGAGCTTGCTACTTATATCGGTCCCCAGGCGATGTTACCCATTTTGCAGCCACCGGGTATGATACCTCAACAGCATATGGGAAACCCATCCACGTCCACGTTTCCCTACAATAATATGGCCAGTCCGATGATGGGTATACCTACGAGGGCATCCCATGGAGGCCAATTGTTGATCCGCGATGCTCAGCAGAATCATCATCCGCCGCAGCAACAGCAGCAGATCTTTGATGCTCAGCAGTTGGCTGTGGCTGTGGCAAGAGAACAGGAGATGTTAAGGAGTTACGAGCAACAGCAACAGCAGCAGCAAGAGCTTTTGAGGTTTAATGGTGGCTTTGATATGACTTCGGCTTGTGGTGGTGGGTTCAACCATATGTCTAGTGCTGCTGGGGCAGAAGCTGCACTGTCTCCTTCCTTGGCTTTGGGAACGTTTGAAAACCCTTATCATCAGCTTCAGCCACAGCAAGCTGAGCATCATCATCCTCATCACCATCAACTTAACCCCCAACTGCTGCTTTCAACACAGCAACCACAAGGGCAACAACAAGCTCCTCAGTCACAGCAACCCCAGCAACAGCAGAACTCGGGAAGCGAGGAGATTCGGAGTGGTGGTCCAGCTTGA 933 0.5059 MSSSNSPCAACKCLRRKCTQECVFAPYFPPDNPQRFANVHKVFGASNVAKLLNELSAAQRDDAVKSLAYEAEARLRDPVYGCVGLISILQHKLKQMQSELDNAKKELATYIGPQAMLPILQPPGMIPQQHMGNPSTSTFPYNNMASPMMGIPTRASHGGQLLIRDAQQNHHPPQQQQQIFDAQQLAVAVAREQEMLRSYEQQQQQQQELLRFNGGFDMTSACGGGFNHMSSAAGAEAALSPSLALGTFENPYHQLQPQQAEHHHPHHHQLNPQLLLSTQQPQGQQQAPQSQQPQQQQNSGSEEIRSGGPA* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00106 310 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Pte11g00106 310 Coils Coil 86 106 - -
Pte11g00106 310 Coils Coil 182 209 - -
Pte11g00106 310 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Pte11g00106 310 MobiDBLite consensus disorder prediction 276 310 - -
Pte11g00106 310 MobiDBLite consensus disorder prediction 276 304 - -
Pte11g00106 310 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00106 Pte-Chr11 1517745 1518677 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00106 1 240 AS2 family AT5G66870 57.752 3.23e-83 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pte11g00106 LOB 2e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00106 - - qsa:O6P43_033796 362.073