Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00102 ATGCACCTGAACTACCAGGAAAGAGACATGGAGCTGAGTTTGGATTTGAGTTTGGCCTTTGTCCCTAAAACAATTTCCGAGTTGCTCGGTGAAGTTTCCAGAAGTACAGATGGGTCTGAAAGATTATCTAAGCTTGATGATTTTCTAAAAAAATTGGAAGATGAGATGAGGAAGATTGAAGCTTTCAAACGTGAGCTTCCTCTTAGCATGCTTTTGGTAAACGACGCTATTGTGAGGTTGAAGGAGCAAAGAGTGCAGCTTTTGCAAATGGAAGATGAACCTGGGACTGAAGAATTCATACCATTGAAAAAGGGTGGCGGAGAAGAAGGTGCTGCTAATAAGGACAACAATAGCAACGATAAGAAAAGCTGGATGAGCTCTGTTCAACTCTGGAGTACGGATACTAGATCGAGGAAGGAAGAAGATTATCAGTCTATTCCTCAAACCCCAATTCAGTCATTGGATAAAAATAACAGGGGAGGTGCATTTATTTCTCTTAATAGAGGAAATTCCGATATCTCATTGACGAAAAACTTAATTAAAAGTAACAGAGAAGTTTCACAAGTCCCTAGCTTTTCTCTCATGACTCCGATATCAGACCTGAGTTCTAGTCATACTCAAGGCAATAGCAAAGGTGGTACTAAGACATCTTTGCAAGCTGAGCCAATTAAAATACATGGCCAGCCTCGAGGTCAGCAGCTGCAGCAGACTTCAAGAAAACAAAGGCGATGCTGGTCTGCTGAGTTGCATAAACGTTTTGTTAATGCACTTCAACAACTTGGAGGTGCACAAGTGGCCACTCCTAAACAGATCAGAGAACTCATGCAAGTTGAAGGTCTGACAAACGATGAAGTGAAAAGCCATTTGCAAAAGTACAGACTTCATGTTAGAAGATTCCCTTCCTCTCCGGCTTCCCCGCCGAATGGTTTGTGGATGACCCAAGATCAATGTGGAGAAACCTCGAAGACAAACTTATCACAGTCTGACTCTCCACAAGGTCCCCTTCTCCTAGGGGGCTCTGTTAGAGTATTCTCAAGCACTGGAGGTAACAGCTTAGACGCTGAAGACGATGAGAATTCAGAGGGTTATAGTTGGAAAGGCAGCTTTCACCAGCAAGGAGAATTTGACGTGCAGTCGTAA 1140 0.4298 MHLNYQERDMELSLDLSLAFVPKTISELLGEVSRSTDGSERLSKLDDFLKKLEDEMRKIEAFKRELPLSMLLVNDAIVRLKEQRVQLLQMEDEPGTEEFIPLKKGGGEEGAANKDNNSNDKKSWMSSVQLWSTDTRSRKEEDYQSIPQTPIQSLDKNNRGGAFISLNRGNSDISLTKNLIKSNREVSQVPSFSLMTPISDLSSSHTQGNSKGGTKTSLQAEPIKIHGQPRGQQLQQTSRKQRRCWSAELHKRFVNALQQLGGAQVATPKQIRELMQVEGLTNDEVKSHLQKYRLHVRRFPSSPASPPNGLWMTQDQCGETSKTNLSQSDSPQGPLLLGGSVRVFSSTGGNSLDAEDDENSEGYSWKGSFHQQGEFDVQS* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00102 379 Coils Coil 73 93 - -
Pte11g00102 379 SUPERFAMILY Homeodomain-like 237 298 IPR009057 -
Pte11g00102 379 MobiDBLite consensus disorder prediction 306 334 - -
Pte11g00102 379 MobiDBLite consensus disorder prediction 96 156 - -
Pte11g00102 379 FunFam Myb family transcription factor 239 297 - -
Pte11g00102 379 Coils Coil 45 65 - -
Pte11g00102 379 Pfam Myb-like DNA-binding domain 242 293 IPR001005 -
Pte11g00102 379 NCBIfam myb-like DNA-binding domain, SHAQKYF class 240 295 IPR006447 GO:0003677
Pte11g00102 379 MobiDBLite consensus disorder prediction 96 116 - -
Pte11g00102 379 MobiDBLite consensus disorder prediction 117 133 - -
Pte11g00102 379 MobiDBLite consensus disorder prediction 298 379 - -
Pte11g00102 379 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 17 366 IPR044787 GO:0003700|GO:0006355
Pte11g00102 379 Gene3D - 239 296 - -
Pte11g00102 379 MobiDBLite consensus disorder prediction 364 379 - -
Pte11g00102 379 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 237 297 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00102 Pte-Chr11 1501418 1503625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00102 10 290 G2-like Transcription Factor Family AT4G37180 38.811 4.65e-56 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pte11g00102 Myb_DNA-binding 2.3e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00102 - - qsa:O6P43_024686 439.884