Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00081 ATGGACGAGGTGATAGATACGGCAGACAAAGAAGTCCTTGTTGACATTGTTAAAATGGTCCAGAAACGTAGAATGAAGGGTGACAAAGGAGATTGGAAGGATTTTTTACGTGGTTATGATCGATCATTAGGGGACAAACTGAGTGATCCTGTTAAAAGGTCACGCGAAGTTTTAGCTGCATTTTTGAAGACATTCTCTAAAGAGGAAGATTTGCAAGTTTTTGATAGGCTAATCAAACACCATTTCCATTGTGAGAAAGTGAAGCAGATTCTGATAGAAAACAAAGACAATGAAACTCCTGAACAGGGCTTAGTTCGGGAAACTCTTGAGCACCCGCTCTATATATCATCTTACTCGGCAATATCATTGAAAGAGGATATGAAAGATTGGACTGTTATAAAGCCGACTAGAAAATCCAAGTTTCTGGGTTCCACTAAAATACTTGCGGTTGATTGTGAAATGGTCCTATGTGAAGATGGAACAGAAGCATTAGTGAAAGTTTGTGTTGTTGGCCGCAATTTAGAGGTCAAACTCAACGAACTTGTAAACCCCAATAAAGCAGTTGCTGATTACAGAACAGAAATTACTGGAGTCACAGCTGCAGACTTAGAAGGAGTCAGATGCACTTTGGCGGACATACAGAGATCTATGGAAAAGTTATTGTCGAATGGAACTACATTGGTGGGCCACAGTTTATATAATGACCTGAAAGCAATGAAGCTGGTTTATTCTAAAGTGATTGACACCTCACTCATCTTCAAATCCAAAGCTGGTGCAATTTTCAGAAGGCCTTCTTTGAATGATTTGTGTAAGTCAGTATTGGGTTACGAAGTTCGAAAGGTTGGTGCTGTTCACAATTGTCTCGATGATGCATGTGCGGCAATGAAACTTGTAATTGCGAGGATAGAGGGTGCAGTCGATGAAGCAGTCCCTGTTGAACCACATGTGGAACATGAGATTGGGAAGCTATTACTACACAGGATACCAATCAGTGTCAAACCTGAAGAATTACATAAAGCCATCCCTGGAGGTTTTGACCTAGAACTGAAGCCCCAAAATAAAGTTGGAGGAAAGCATTATTCTGCCTTTGCTGTCTTTAAGAATATGGAAGAGGTACATCAAGCATATGAAAATTCCACTGGAACCCAAGAACAGGACTCGTTTGGGTTGCCCCAAAAACTAGTTAGCTTTCAACTAGAAACAGGTGAGTTTGCAAGAATATATGTCCGGGTTGTGTGTGAGAGAAAGTTCAAAACTGAAGCTAACTGCAAGAGTGAGACTAAAGATCCTGAAGAAAAAATTTCTATAAAGAAAAGAGCTTTCGAAGAAAGTGGTGTTACCAGTGTAAACTCCAAGAAAGCAAGGAAAAGTGCTGATACAGCTGTTGAAGATGAAGCTATCAAGAATGGGAGGAAAGATCCTGAAGAAGAGAATCCTGAGAATGGCTCGCATGACTCTTGCAATCACTTAGAAGAAATTGAAAAATTAAATCAACAACTTAAAGCCAAGGACATGGAGATCGAGTCGTTGAAATCGGTGGTGAAACAAAAGGATTTCCAAATCTCTGTGCTCGACAAAATGGTATCTTCCCTGAAGCAAAAGGTCAAATAA 1611 0.4004 MDEVIDTADKEVLVDIVKMVQKRRMKGDKGDWKDFLRGYDRSLGDKLSDPVKRSREVLAAFLKTFSKEEDLQVFDRLIKHHFHCEKVKQILIENKDNETPEQGLVRETLEHPLYISSYSAISLKEDMKDWTVIKPTRKSKFLGSTKILAVDCEMVLCEDGTEALVKVCVVGRNLEVKLNELVNPNKAVADYRTEITGVTAADLEGVRCTLADIQRSMEKLLSNGTTLVGHSLYNDLKAMKLVYSKVIDTSLIFKSKAGAIFRRPSLNDLCKSVLGYEVRKVGAVHNCLDDACAAMKLVIARIEGAVDEAVPVEPHVEHEIGKLLLHRIPISVKPEELHKAIPGGFDLELKPQNKVGGKHYSAFAVFKNMEEVHQAYENSTGTQEQDSFGLPQKLVSFQLETGEFARIYVRVVCERKFKTEANCKSETKDPEEKISIKKRAFEESGVTSVNSKKARKSADTAVEDEAIKNGRKDPEEENPENGSHDSCNHLEEIEKLNQQLKAKDMEIESLKSVVKQKDFQISVLDKMVSSLKQKVK* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00081 536 CDD REX1_like 148 298 IPR034922 -
Pte11g00081 536 SMART exoiiiendus 146 307 IPR013520 -
Pte11g00081 536 Pfam Exonuclease 149 297 IPR013520 -
Pte11g00081 536 Coils Coil 490 513 - -
Pte11g00081 536 SUPERFAMILY Ribonuclease H-like 147 302 IPR012337 -
Pte11g00081 536 MobiDBLite consensus disorder prediction 447 487 - -
Pte11g00081 536 MobiDBLite consensus disorder prediction 456 487 - -
Pte11g00081 536 Gene3D - 142 311 IPR036397 GO:0003676
Pte11g00081 536 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 13 311 IPR047021 GO:0004527
Pte11g00081 536 FunFam Small RNA degrading nuclease 3 142 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00081 Pte-Chr11 1284367 1288698 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00081 45 297 C2H2 Transcription Factor Family AT2G48100 28.188 1.52e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00081 K14570 - qsa:O6P43_013849 551.977