Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00060 ATGGAGATACCCTTATTAAAGGTACTGCTTGGAAGCATATCTTCTTATCTGCGCTTGTCCGATTCTGACGACATAAACTCGGCACCAGTCACAAGATATTATTATAAAGAACAGGAAATACTTAAATTATTGAAGCCCATACTTGATGCAATTGTTGGTTCTGAAATCGCGTCAAATGAAACACTGTGCAAGACTTTTGAAGAATTAGGTCAATCTGTTGATGACCTGAGAGAGCTGATTGAATACTGGCAACCATTGTCAAGCAAAATTTATTTTGTCCTACAAATTGAGTCCTTATTATGTAAGATTCAGACTTCTTGCATTAAGGTTCTCCAACAGTTGAAGGCTTCCCATCCACATCTTCCCGAAGAATTGAGTTTAGCATCTCTTGAGCAATGTATGCAGAAAATTAAGCATATGGGACATGAAAGCACATCATCAACCATAAAAGATGCTATAACAGATCAACAGGAGGGTAATAAGCCTAGTTCTGAGATCGTCGAGAAAATTTCTGAAAACTTGTGCTTGGAAACAAACCAGGACATTTTAATCGAGGCTGTTGCGCTTGAAAAACTGAAGGAAAATGCTGAACAAGCAGAAAAAACTGCAGAAGCAGAGTACATAGATCAAACTATTGCTCTTGTAACATATATGCACGAACGCCTTCTTGCAATTAAGCAGTCAGAGAGCTGTAGTCCTGTTCATATTCCTGCTGATTTTTGTTGTCCTCTGTCGCTGGAGCTGATGATAGATCCTGTTATTGTGGCATCTGGGCAAACGTATGAGCGTGTTTACATAAAAAGTTGGATTGAACTTGGACTAACTGTATGTCCTAAGACCCGTCAAACTTTGGCTCACACTAATTTAATTCCTAATTACACTGTAAAGGCACTAATTGCTAATTGGTGCGAGTCAAACAATGTGAAGTTGGTTGAACCAATGAAACCAGTGGGTTTAAGCCAAGCATCACGGAGTCTTGGGCATGTGGAGTCTTGTGCTACTAGAGAAGTTCTTTTTGCTTCATCCAGGATCAATCAGTTGCTGGACGCTACACACTATGCTGTCGGTGCACCTGCTAAGAATTCAATATCGTCTGATGGAGCGAAACGGGAAGAAACATCACTGTTGCATCCTCAATCAAGTTCTGATGGTTTTTTGCCTGCTGAAGATGTACATGGTTTGGCTATCGCAAGATTATCACTGACAGATTCAGATGACAGGCCTGCTAATACTGAAGAAAGTGTATTGGACGTTGATTCCCATGTTTCATTCTTTCCATCTAGAAGGGAATCTTCTAATTCTACAGCAGAAGAAAAGTCTCAACACCATATCAGGACTATGTCAGAGTCTAGCACTCTCCCTAATATAAACATTTCTCAAGGAACACAACTAGATGCTAATGACACCTCACAGGTATCTTCCAATCTGACCGGCTATAGCAGTGATGCTTCTGCTGAGGTAAGTCCTGGACCAGATGCTACTTCTACCTTGACTGCCCCACAGAGAGAAACAGAATTCCCACCTCGGTTGATGGAGACCAGATCTCGGAATCAAGCAATTTGGCGCAGACCTTCTGAAAGATTTATGCCAAGGATGGTTTCTTCTCCTGCCTCTGAAACCAGACCTGATCTTTCTGCCATTGAAAATCAAGTCCAAAAATTGGTTGAGGAGTTGAAAAGCTCTTCCCTAGATAACCAAAGAGAAGCAACATCACAATTGCGGCTACTTGCTAAGCACAACATGGATAATCGTATTGTGATTGCGAACTCGGGGGCCATCAGTTTACTTGTTAACTTACTCCGCTCAACTGATGCTGGTATTCAAGAGAATGCTGTTACAGCTCTACTTAACCTATCTATCAATGATAACAACAAAAGTCTCATTGCAAATGCTGATGCGATTGATCCTTTAATTCATGTCCTTGAGACTGGTAGCCCAGAAGCCAAGGAAAACTCAGCTGCCACCCTTTTTAGCTTATCAGTAATTGAGGAAAACAAAATTAAGATTGGAAGGTCAGGGGCTGTTAGACCTTTAGTTGATCTATTGGGAAATGGTACTCCTAGGGGAAAGAAAGATGCGGCCACCGCTTTGTTTAATTTGTCCATCTTTCATGAAAACAAGGGGCGGATTGTACAAGCTGGTGCTGTGAAACATCTTGTGGATTTAATGGACCCAGCAGCTGGGATGGTTGACAAGGCAGTTGCGGTGCTGGCTAATTTGGCCACTATCCCGGAGGGAAGGACTGCAATTGGTGAAGAAAATGGCATTCCTGTTTTGGTTGAGGTTGTCGAGCTGGGTTCTGCTCGAGGAAAGGAGAATGCTGCAGCAGCCCTTTTACATCTTTGTCAAAATAGTGGCAGATTTTGTAGTCAGGTTCTACAAGAAGGAGCTGTACCACCACTCGTGGCTTTGTCACAGTCAGGTACTCCAAGGGCCAAAGAAAAGGTAGGCTGCAGGTTTACCCTGATCATTTGCGTGTAG 2481 0.4228 MEIPLLKVLLGSISSYLRLSDSDDINSAPVTRYYYKEQEILKLLKPILDAIVGSEIASNETLCKTFEELGQSVDDLRELIEYWQPLSSKIYFVLQIESLLCKIQTSCIKVLQQLKASHPHLPEELSLASLEQCMQKIKHMGHESTSSTIKDAITDQQEGNKPSSEIVEKISENLCLETNQDILIEAVALEKLKENAEQAEKTAEAEYIDQTIALVTYMHERLLAIKQSESCSPVHIPADFCCPLSLELMIDPVIVASGQTYERVYIKSWIELGLTVCPKTRQTLAHTNLIPNYTVKALIANWCESNNVKLVEPMKPVGLSQASRSLGHVESCATREVLFASSRINQLLDATHYAVGAPAKNSISSDGAKREETSLLHPQSSSDGFLPAEDVHGLAIARLSLTDSDDRPANTEESVLDVDSHVSFFPSRRESSNSTAEEKSQHHIRTMSESSTLPNINISQGTQLDANDTSQVSSNLTGYSSDASAEVSPGPDATSTLTAPQRETEFPPRLMETRSRNQAIWRRPSERFMPRMVSSPASETRPDLSAIENQVQKLVEELKSSSLDNQREATSQLRLLAKHNMDNRIVIANSGAISLLVNLLRSTDAGIQENAVTALLNLSINDNNKSLIANADAIDPLIHVLETGSPEAKENSAATLFSLSVIEENKIKIGRSGAVRPLVDLLGNGTPRGKKDAATALFNLSIFHENKGRIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIPEGRTAIGEENGIPVLVEVVELGSARGKENAAAALLHLCQNSGRFCSQVLQEGAVPPLVALSQSGTPRAKEKVGCRFTLIICV* 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00060 826 SMART arm_5 743 783 IPR000225 GO:0005515
Pte11g00060 826 SMART arm_5 621 661 IPR000225 GO:0005515
Pte11g00060 826 SMART arm_5 662 702 IPR000225 GO:0005515
Pte11g00060 826 SMART arm_5 580 620 IPR000225 GO:0005515
Pte11g00060 826 SMART arm_5 703 742 IPR000225 GO:0005515
Pte11g00060 826 SUPERFAMILY RING/U-box 223 313 - -
Pte11g00060 826 Coils Coil 544 564 - -
Pte11g00060 826 MobiDBLite consensus disorder prediction 424 510 - -
Pte11g00060 826 MobiDBLite consensus disorder prediction 359 387 - -
Pte11g00060 826 Coils Coil 179 209 - -
Pte11g00060 826 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 714 755 IPR000225 GO:0005515
Pte11g00060 826 CDD RING-Ubox_PUB 237 289 IPR045210 -
Pte11g00060 826 MobiDBLite consensus disorder prediction 446 502 - -
Pte11g00060 826 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 591 633 IPR000225 GO:0005515
Pte11g00060 826 FunFam RING-type E3 ubiquitin transferase 534 823 - -
Pte11g00060 826 Pfam Armadillo/beta-catenin-like repeat 582 619 IPR000225 GO:0005515
Pte11g00060 826 Pfam Armadillo/beta-catenin-like repeat 664 701 IPR000225 GO:0005515
Pte11g00060 826 Pfam Armadillo/beta-catenin-like repeat 621 660 IPR000225 GO:0005515
Pte11g00060 826 SUPERFAMILY ARM repeat 548 815 IPR016024 -
Pte11g00060 826 FunFam RING-type E3 ubiquitin transferase 235 310 - -
Pte11g00060 826 SMART Ubox_2 239 302 IPR003613 GO:0004842|GO:0016567
Pte11g00060 826 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 310 IPR013083 -
Pte11g00060 826 ProSiteProfiles U-box domain profile. 235 309 IPR003613 GO:0004842|GO:0016567
Pte11g00060 826 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 673 715 IPR000225 GO:0005515
Pte11g00060 826 PANTHER U BOX DOMAIN-CONTAINING 31 815 - -
Pte11g00060 826 Pfam U-box domain 236 306 IPR003613 GO:0004842|GO:0016567
Pte11g00060 826 Gene3D - 531 825 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00060 Pte-Chr11 1016103 1022287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00060 196 816 U-box Gene Family AT2G23140 62.201 0.0 727
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00060 - - qsa:O6P43_024581 1125.15