LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte11g00040	ATGAAGCGTGCGCATAATCATACTTCCAATAACCATAATATGTCGTTGGGATTCTGTGTTTCTCCTGAAATGAACATCCATGTTGCTTCCGACGCTCGCGAGCTTCACCAGACACAGCCTTTTTCTTCCGCTGCAGCTGCATCAGCAGGGCCAGCATCTTCACCGAGTATTTTACACTTCCTGCCTTCTACGAACTACGGGATATCTTGTGGTCAAAACAGTAGCTTTTATTCCTCAGTGTCTCTAATGCCTCTCAAGTCTGATGGATCTCTTTGTTTACCGGAAGCTCTTAACAAGTCACAGTCACAAGCACTAGTTGCAGCTTCAGCTCCAAAACCGGAAGACTTTTTTGGTGGCGGCACCCATCAATATGAATGCAATAAATTTAGCAGAGATGGAATGCTTTTGAGTTTAGAGAGAGTGATTGACCATCCATCTTCTCAAGAAAGAGGCGAAAAGTCAAGAAACCAAGAACAAGGCCAGTATACTTACTATTCTGGCTTTATTTGCCATAATGGAATGAACAGAATGACAGAATTGGAAAAGCAAAAGCGGGTATCTCATCTAAACTTTCAGGTAGCACAACCAGCTACCACTGAGAATGGAAACCCATCTGGCCCAAAAAGCTGGGCCTTGGGGAGCTATTTGGTGAATCATGTAGATGTAGCAGATCAGAGAATGGTTGGCTTTTCAGATGAAAATGGAGAAATGCAATCGTTAAACTTGTCCGTGAGCCCTGGCTCTCAATCAAGCTGTGTTACCGGTATACAGCATACACATACAAATGTGACGGATTCTATCTCCATGGATAAAAAGAAAAGGAGTCCAGCTGGAAGGTCGGCTACGAAGCAAATTGTTCATAGAAAATCCTTGGATACTTTTGGACAAAGAACGTCCCAGTATAGAGGTGTTACAAGGCATAGATGGACTGGCAGATATGAAGCCCATCTGTGGGATAATAGCTGCAAGAAAGAGGGTCAGACTAGGAAAGGAAGGCAAGGTATATATGCTTCACAACTTCATTCGATTTATTTAGGGGGGTATGATATGGAAGAAAAAGCTGCAAGGGCTTATGATCTGGCTGCACTCAAGTATTGGGGGTCCTCCACTCATATCAATTTTCCATTGGAAAACTACAACAAAGAACTCGAAGAAATGAAGAATATGTCAAGGCAAGAATATGTGGCTCATTTAAGGAGGAAAAGTACTGGATTCTCGAGAGGTGCTTCCATATACAGAGGAGTAACGAGACATCACCAGCATGGACGATGGCAAGCTAGGATTGGCAGGGTAGCTGGGAACAAAGATCTCTATCTGGGAACATTTAGTGAGTTTCTTCGTTCAATCTAA	1350	0.4311	MKRAHNHTSNNHNMSLGFCVSPEMNIHVASDARELHQTQPFSSAAAASAGPASSPSILHFLPSTNYGISCGQNSSFYSSVSLMPLKSDGSLCLPEALNKSQSQALVAASAPKPEDFFGGGTHQYECNKFSRDGMLLSLERVIDHPSSQERGEKSRNQEQGQYTYYSGFICHNGMNRMTELEKQKRVSHLNFQVAQPATTENGNPSGPKSWALGSYLVNHVDVADQRMVGFSDENGEMQSLNLSVSPGSQSSCVTGIQHTHTNVTDSISMDKKKRSPAGRSATKQIVHRKSLDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQGIYASQLHSIYLGGYDMEEKAARAYDLAALKYWGSSTHINFPLENYNKELEEMKNMSRQEYVAHLRRKSTGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSEFLRSI*	450

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Pte11g00040	449	ProSiteProfiles	AP2/ERF domain profile.	300	375	IPR001471	GO:0003700\|GO:0006355
Pte11g00040	449	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	112	443	-	-
Pte11g00040	449	SUPERFAMILY	DNA-binding domain	299	377	IPR016177	GO:0003677
Pte11g00040	449	PRINTS	Ethylene responsive element binding protein signature	301	312	IPR001471	GO:0003700\|GO:0006355
Pte11g00040	449	PRINTS	Ethylene responsive element binding protein signature	357	377	IPR001471	GO:0003700\|GO:0006355
Pte11g00040	449	SMART	rav1_2	411	448	IPR001471	GO:0003700\|GO:0006355
Pte11g00040	449	SMART	rav1_2	300	381	IPR001471	GO:0003700\|GO:0006355
Pte11g00040	449	FunFam	AP2-like ethylene-responsive transcription factor ANT	299	377	-	-
Pte11g00040	449	Gene3D	AP2/ERF domain	411	445	IPR036955	GO:0003700\|GO:0006355
Pte11g00040	449	Gene3D	AP2/ERF domain	299	377	IPR036955	GO:0003700\|GO:0006355

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte11g00040	Pte-Chr11	899267	901490	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte11g00040	1	442	AP2-EREBP Transcription Factor Family	AT4G37750	48.211	1.83e-115	348

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Pte11g00040		AP2	1.9e-09	CL0081

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte11g00040	K09285		-	qsa:O6P43_033936	476.478

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