Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00020 ATGGTTTGCACTACTAATGATTTACGTGGATGGAAAGATTTTCCCAAGGGACTTCGGGTTCTACTTCTTGATGAAAATGGTAGCTCAGCTGCCGAGATAAAGCCGAAGCTCGAGGCCATGGACTACATTGTTACAACTTTCTGCAGTGAGAACGAAGCCCTGTCAGCAATAAAGAATGGACCTGAAAGTTTCCATCTCGCTATAGTCGAGGTAAATGGAAGTCGTGATGAGAGCCATTTCAAATTTCTCGAGAATGCCAAGGACTTGCCTACAATTATGACGTCAGGTGCCCATTGCCTAAGTACCATGATGAAGTGCATAGCGCTCGGTGCTGTTGAATTCATGCAGAAACCACTCTCAGATGATAAACTACGGAATATCTGGCAGCATGTGGTTCACAAGGCATTCAATTCAGAGGCAAGTGGCATAACTGAACCGCTAAAACCTGTCAAAGAATATGTAGTGACCATGCTGCAACTCCTGACAGAAGATGAAGCTCATATGTCTGGAGTAGGTGAAATGGACAATTCACAATCTACAGGCAATGACAGATACCCTGCTCCTGCAACCCCACAATTGAAACAGGGGACAAGGTTTATTGATAATGGTGATCGCCACGATCATAACAATTGCTCCACGGAAAAAGACTCTGGAGAGCAAGATGGGGGATGTAAATCTGTCGACACTACATGTGCTACTAGGAACGTTGAAGGTTCCTTCCTCGATAACAAGCCTACAACTCCGGAGAGGATTTTGGTCAAGGAGGAAGAGGAGTTAGCTGATGCTAAGAGTGAGAATGAAGTATCTGCACATACACAGGATGAGAAGGTTGTCAACAGCATTATGACTCCAAGTAAAGCATCCATTCAAATTGATTCAAAAGGGAACAAAACTAATCGGAAGAAGATGAAGGTAGACTGGTCACCTGAACTACACAAGAAGTTTGCCCAGGCAGTAGAACAGCTAGGGATTGATCAAGCAATTCCTTCACGTATACTGGAGCTAATGAAGGTGGAAGGTTTGACAAGGCATCATGTTGCAAGTCATCTCCAGAAATACCGAATGCATAAGAGACATATCTTACCCAAGGAAGATGATCGCAAGTGGTTGCACCAAAGAGATCAAAAGCAAAAGAGCTATTATCAACAAAGATCCATAATCGCCTACCCTCACTACTATTCTAATCCGACACTGCCGGCAGCACATGTATATCCGATATGGAGACAATGTGCGAGCTACCCCGCAGGTGTTCAGATTTGGGGTCCACATGGATATCCCTTTTGGCAACCACAGGAAAGTTCGATTTGGACGCCTTCCTCAGGGTTGCATGCAGATGCGTGGGGGTGCCCAGTGTTGCCACCTTCTTCCTATCCTCAAAGTGCGCTTGGTTATCATCACACAGGTGTGGTTGATTTTGGCAGTAGCATACTGAAAAATTCGTTTCAGATCGATCAGGCAGAGGTAATTGACAAAGTTGTGGAAGAGGCAATAAGCAAGCCATGGCTTCCCTTACCCTTAGGCCTCAACCCTCCTTCTACTGACAGTGTGTTAGCTGAGCTCTCGAAGGAAGGTTTCTCCGACATCCCTCCTTAA 1593 0.4526 MVCTTNDLRGWKDFPKGLRVLLLDENGSSAAEIKPKLEAMDYIVTTFCSENEALSAIKNGPESFHLAIVEVNGSRDESHFKFLENAKDLPTIMTSGAHCLSTMMKCIALGAVEFMQKPLSDDKLRNIWQHVVHKAFNSEASGITEPLKPVKEYVVTMLQLLTEDEAHMSGVGEMDNSQSTGNDRYPAPATPQLKQGTRFIDNGDRHDHNNCSTEKDSGEQDGGCKSVDTTCATRNVEGSFLDNKPTTPERILVKEEEELADAKSENEVSAHTQDEKVVNSIMTPSKASIQIDSKGNKTNRKKMKVDWSPELHKKFAQAVEQLGIDQAIPSRILELMKVEGLTRHHVASHLQKYRMHKRHILPKEDDRKWLHQRDQKQKSYYQQRSIIAYPHYYSNPTLPAAHVYPIWRQCASYPAGVQIWGPHGYPFWQPQESSIWTPSSGLHADAWGCPVLPPSSYPQSALGYHHTGVVDFGSSILKNSFQIDQAEVIDKVVEEAISKPWLPLPLGLNPPSTDSVLAELSKEGFSDIPP* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00020 530 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 530 IPR044825 GO:0003700|GO:0045893
Pte11g00020 530 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 299 358 IPR017930 -
Pte11g00020 530 SUPERFAMILY Homeodomain-like 300 359 IPR009057 -
Pte11g00020 530 MobiDBLite consensus disorder prediction 166 224 - -
Pte11g00020 530 SUPERFAMILY CheY-like 16 134 IPR011006 -
Pte11g00020 530 Pfam Myb-like DNA-binding domain 305 354 IPR001005 -
Pte11g00020 530 FunFam Two-component response regulator 298 361 - -
Pte11g00020 530 MobiDBLite consensus disorder prediction 172 186 - -
Pte11g00020 530 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Pte11g00020 530 MobiDBLite consensus disorder prediction 199 222 - -
Pte11g00020 530 NCBIfam myb-like DNA-binding domain, SHAQKYF class 302 357 IPR006447 GO:0003677
Pte11g00020 530 Gene3D - 18 142 - -
Pte11g00020 530 SMART REC_2 18 128 IPR001789 GO:0000160
Pte11g00020 530 FunFam Two-component response regulator-like APRR2 17 142 - -
Pte11g00020 530 Gene3D - 298 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00020 Pte-Chr11 505427 510680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00020 1 529 Response Regulator Gene Family AT4G18020 48.233 3.87e-136 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Pte11g00020 Myb_DNA-binding 1.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00020 - - qsa:O6P43_024457 673.315