Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00017 ATGGATACACACAGTGCCAAATTGAGGAACCACGAAAACGAAAATGAGATTGAGAAAGAAAACAATGATGCTACTAATTTGAGTTCGGAGAAAGAACTGGTGGATGTGACGCTTACTCTGGTTCAGAAATCTAGTACTGGCGCCAGTACGGATAGTCAAATTAACTCAGAGGACCATCGGATTCAAAACCCTAGCGACCGCACCACGCATGACCTAATCAAAGAGCTTACCAACTCCTCCTCTGCTGCTGCCGACGACCTCATTGAGCAAGAACAATCAGAACAAGACCATGTCGTGCTTGATGTGTCCTCCAAATCACGTGTCTACATTGACAACAACACTGCCTCATGCGTTTCCGTCGATGCCTCGTCTAACGACGCTACTCCAGCATCCAATCCCATCAACTCCACATCCACTGATAGTCTCAGCCGCCTTAAAGATGTCAAATCCCTTTCCCAATCAAAGCAGTCCTCTAGGGCCAAAAACTACAATGTCTGGGGAACAGCTAATGTCAATAACACCACGCTTGCTGATCCAGAGCAAATGGGTGAATTCGATGACTCTGGAACACCTGCAGAGCGAGCCGCATTTATGAACCAGCTCGAAACGTTCCACAGGGAGAAAGCCCTCGACTTCAAACCCCCTAAATTTTACGGAGAGCCACTTAATTGCCTCAAATTATGGAGGGCTGTTATCAGACTTGGGGGCTATGACGTGGTCACTGCATCCAAACTGTGGCGACAAGTAGGAGAGTCTTTCCACCCTCCCAAGACTTGTACAACAGTCTCTTGGACTTTTCGAAATTTCTATGAGAAGGCACTCCTGGAATATGAAAAGCATAAGAGGGATATCGGGGAGCTGCACCTCCCTGCTGGATCATTTCATCAGATTTCAAACAATGAAAAGGAGGCAACTGCTTATCAGGGTTCAGGATCAGGAAGGGCTAGAAGAGATGCTGCAGCCCGTGCTATGCAAGGTTGGCATGCACAGCGCCTTCTTGGATATGGCGAGGTTGCTGAGCCAATCATTAAGGAAAAGAATTTGAACTCTTCAGCAAAACGTGAAAAGAATCTCAAAAGCCTCGGCATGATTAATAAGAGGATGCCAAGCAGTATGGAGCATGCTGACAAAGGCTCAAATGTTGAAGGAGATAAACAACTCATCACAGGAATTGTTGATGTTGGTCCCCCAGCTGACTGGGTTAAAATAAATGTCCGTCAAACTAAGGATTGTTTCGAGGTGTATGTTCTGGTACCTGGGCTTCTGCGTGAGGAGGTTCGAGTACAATCAGATCCAGCTGGACGTCTTGTGATAACAGGGGAACCAGAGCAGATTGAAAATCCGTGGGGTATCACGCCATTTAAAAAGGTTGTAACCTTGCCTGCTAGAATCGATCCGCTGCACACTTCTGCTGTTGTGAGCCTGCATGGCCGTCTGTTTGTACGTGTTCCTTTTGAATAG 1461 0.4682 MDTHSAKLRNHENENEIEKENNDATNLSSEKELVDVTLTLVQKSSTGASTDSQINSEDHRIQNPSDRTTHDLIKELTNSSSAAADDLIEQEQSEQDHVVLDVSSKSRVYIDNNTASCVSVDASSNDATPASNPINSTSTDSLSRLKDVKSLSQSKQSSRAKNYNVWGTANVNNTTLADPEQMGEFDDSGTPAERAAFMNQLETFHREKALDFKPPKFYGEPLNCLKLWRAVIRLGGYDVVTASKLWRQVGESFHPPKTCTTVSWTFRNFYEKALLEYEKHKRDIGELHLPAGSFHQISNNEKEATAYQGSGSGRARRDAAARAMQGWHAQRLLGYGEVAEPIIKEKNLNSSAKREKNLKSLGMINKRMPSSMEHADKGSNVEGDKQLITGIVDVGPPADWVKINVRQTKDCFEVYVLVPGLLREEVRVQSDPAGRLVITGEPEQIENPWGITPFKKVVTLPARIDPLHTSAVVSLHGRLFVRVPFE* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00017 486 Pfam ARID/BRIGHT DNA binding domain 194 278 IPR001606 GO:0003677
Pte11g00017 486 MobiDBLite consensus disorder prediction 44 67 - -
Pte11g00017 486 Gene3D - 393 486 IPR008978 -
Pte11g00017 486 FunFam AT-rich interactive domain-containing protein 3 191 290 - -
Pte11g00017 486 MobiDBLite consensus disorder prediction 44 59 - -
Pte11g00017 486 SMART bright_3 192 283 IPR001606 GO:0003677
Pte11g00017 486 CDD ARID 193 278 - -
Pte11g00017 486 SMART ARID_2 188 278 - -
Pte11g00017 486 MobiDBLite consensus disorder prediction 119 156 - -
Pte11g00017 486 Gene3D - 191 288 IPR036431 GO:0003677
Pte11g00017 486 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 389 486 IPR002068 -
Pte11g00017 486 MobiDBLite consensus disorder prediction 1 26 - -
Pte11g00017 486 SUPERFAMILY HSP20-like chaperones 398 484 IPR008978 -
Pte11g00017 486 Pfam Hsp20/alpha crystallin family 406 484 IPR002068 -
Pte11g00017 486 FunFam AT-rich interactive domain-containing protein 3 381 486 - -
Pte11g00017 486 CDD ACD_sHsps_p23-like 405 484 - -
Pte11g00017 486 ProSiteProfiles ARID domain profile. 191 282 IPR001606 GO:0003677
Pte11g00017 486 MobiDBLite consensus disorder prediction 1 30 - -
Pte11g00017 486 Coils Coil 1 30 - -
Pte11g00017 486 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 48 486 IPR045147 GO:0006357
Pte11g00017 486 SUPERFAMILY ARID-like 186 285 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00017 Pte-Chr11 345878 350960 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00017 184 486 ARID Transcription Factor Family AT1G76510 71.287 7.25e-154 443
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Pte11g00017 ARID 6.3e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00017 - - gmx:100797486 525.398