Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00016 ATGGCGTACCAGTCACTTCAGGGTCCGAGTTCAGGATCCAGCTCAACTAGCTCAGGTTTTCAATTCGGGAATTCTCCTTTTGGTGATACCACTTACACAAAAGTCTTCGTCGGAGGATTGGCTTGGGAAACTCAGAGCGATACCATGCGCCGCTACTTCGAACAGTTTGGCGATATTCTTGAGGCCGTTGTTATCACAGATAAGAACACAGGCCGATCCAAGGGCTACGGTTTTGTCACTTTTCGGGAACCTGAAGCTGCTAGGAGAGCTTGTGCTGATCCGAGCCCAATTATTGACGGTAGGCGAGCTAATTGTAATCTGGCTTCACTCGGCCGACCACGCCCGCCTCTACCATATGGGCGTTTGAGGTTGGCCTCCTCCCACATTGGCAGTTTCCAACCTGCTCGGAGTGCTTATGTCGGCGGTTTTGGCTATCAGCAACCGCTTTCTCACAGTTATAATCAAGGATTGATCTATCCTCCTTATGGGTATACAACATATGGACCTGAATACGTCTACCCACAGGGTTTATACAATCCATACATTGCTCACCAGTATCTTCAGATATATGGGGTTCCTGGTTCAGTTAATACGACAATGTATCCGTATGGGCAGATTGGCCCAGCAGTTCCTGGCAGTCATGGTTATTCGACAATGCAAGGTTATGCGATGCCTACTCATCAGATTGTGCCATTTGGGGCTCCTGGTGTTAACACAATTTCAACTTCCACCATGCCTACTATTCAAGCCCCATATCCCAGTGGTATTGCTACGCCTGCACAACCACAATTCATCGTTACTGCTCCTTCTCCTCAATACCTGCAAGGTGGTGCGTCTGACCAAACAGTTGGGTAA 855 0.4854 MAYQSLQGPSSGSSSTSSGFQFGNSPFGDTTYTKVFVGGLAWETQSDTMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPSPIIDGRRANCNLASLGRPRPPLPYGRLRLASSHIGSFQPARSAYVGGFGYQQPLSHSYNQGLIYPPYGYTTYGPEYVYPQGLYNPYIAHQYLQIYGVPGSVNTTMYPYGQIGPAVPGSHGYSTMQGYAMPTHQIVPFGAPGVNTISTSTMPTIQAPYPSGIATPAQPQFIVTAPSPQYLQGGASDQTVG* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00016 284 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 27 114 - -
Pte11g00016 284 SMART rrm1_1 34 106 IPR000504 GO:0003723
Pte11g00016 284 CDD RRM_RBM24_RBM38_like 33 108 - -
Pte11g00016 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 110 IPR000504 GO:0003723
Pte11g00016 284 PANTHER BOULE-RELATED 11 257 - -
Pte11g00016 284 SUPERFAMILY RNA-binding domain, RBD 32 145 IPR035979 GO:0003676
Pte11g00016 284 Gene3D - 4 117 IPR012677 -
Pte11g00016 284 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 91 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00016 Pte-Chr11 331582 335897 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00016 29 109 C2H2 Transcription Factor Family AT2G19380 41.975 1.27e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00016 - - gmx:100782606 439.884