Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00008 ATGGGGAGGCAACCGTGCTGTGACAAGATTGGATTGAAGAAAGGACCATGGACAGCAGATGAGGACAAGAAGCTAATCAACTTTATCCTCACCCATGGCCAATGCTGCTGGAGAGCTGTTCCTAAGCTTGCAGGACTATTAAGGTGCGGAAAAAGTTGTAGGCTTAGATGGACCAACTATCTCAGGCCAGACTTGAAGAGGGGTCTTCTCTCGGAATATGAAGAGAAAATGGTCATGGATCTCCATGCTCAACTTGGCAACAGATGGTCCAAAATTGCTTCTCATCTACCTGGAAGAACTGATAATGAAATCAAGAACCATTGGAATACACATATAAAGAAGAAACTGAAGAAGATGGGGATTGACCCTCTCACCCACAAACCAATCCCTACCTCACCAAATGAACAAAGCCAGAAACCTGAACCAGCAAGAGAGCAACAGCAGCAGCTTGCTTCACTTAGTAATCCCTGCATTGAAATGAAAGAAAGCAATGAGTCTGAGACATCACACAAGTCATCAACCGTAACTGAAGCTAAAGAAGAAGACCGAACCAATGAAAGCCCTTTTGACACGATGGAACTGGTATCTGAACTCTGCACAGATGAAATTCCAATTATAGTTCCTTCATCAACATGTCCATCAACAACATCATCATCATCATCTTCTTCTTCTTGTTGTTCCAACTCAGTCAACTTCCTTGATGACTTGCAGCTCCCAGATTTTGATCAGTGGTCTTGTAATTACAGCAACATGGACAATAATAATGCCAACAACAACATGAGTTTTTGGGACGATGACTTTAGTAGTTGGGATTTGCTAATTAATGACTATGACAGTGATAGACAGCAAATGATTGATCCACCTATCAACCAGTACCCAAGAATGGTTATGGATCAAGAATATGCGGCACATGGACTCTTTTGA 924 0.4221 MGRQPCCDKIGLKKGPWTADEDKKLINFILTHGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVMDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPLTHKPIPTSPNEQSQKPEPAREQQQQLASLSNPCIEMKESNESETSHKSSTVTEAKEEDRTNESPFDTMELVSELCTDEIPIIVPSSTCPSTTSSSSSSSSCCSNSVNFLDDLQLPDFDQWSCNYSNMDNNNANNNMSFWDDDFSSWDLLINDYDSDRQQMIDPPINQYPRMVMDQEYAAHGLF* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00008 307 MobiDBLite consensus disorder prediction 120 187 - -
Pte11g00008 307 Gene3D - 11 67 - -
Pte11g00008 307 MobiDBLite consensus disorder prediction 129 162 - -
Pte11g00008 307 MobiDBLite consensus disorder prediction 163 187 - -
Pte11g00008 307 CDD SANT 16 61 IPR001005 -
Pte11g00008 307 Gene3D - 70 150 - -
Pte11g00008 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pte11g00008 307 FunFam MYB transcription factor 11 67 - -
Pte11g00008 307 FunFam Myb transcription factor 71 133 - -
Pte11g00008 307 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pte11g00008 307 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 230 - -
Pte11g00008 307 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pte11g00008 307 SMART sant 66 114 IPR001005 -
Pte11g00008 307 SMART sant 13 63 IPR001005 -
Pte11g00008 307 CDD SANT 74 112 IPR001005 -
Pte11g00008 307 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pte11g00008 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pte11g00008 307 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Pte11g00008 307 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00008 Pte-Chr11 207291 209437 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00008 1 279 MYB Transcription Factor Family AT1G66230 58.562 2.62e-99 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte11g00008 Myb_DNA-binding 1.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00008 K09422 - qsa:O6P43_020577 369.007