Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte11g00002 ATGGGCGAAAAAAGAGAAACCAACATCCCTGTTCTGCCATGGATGCGAGACCCAGTTGATATTAGTCGCTTTCAACACCAACGCTTAGAAACCCTTCCTTGCCTTGATGCCAGACTGAAGATAGCATTGCAGAGCTTGTGCATTTCCGAGCTATTCCCTGTACAAGTTGCAGTATGGCAAGAAACAATCGGTCCTGGCAACTTTGAAAGGGACCTTTGTATAAATTCTCCAACAGGAAGTGGGAAGACTTTGGCCTATGCTTTGCCTATAGTTCAAAAGTTGTCAACTCGTGTTATCAAATGTTTGCGAGCATTGGTGGTGTTGCCAACACGTGATTTAGCTGTGCAGGTTAAAGAAGTTTTTGATCCACTTGCATCAGCTGTGGGATTATCTGTTGGTCTTGCAGTTGGCCAATCTTCAATAGCAGATGAAATTGCTGAGCTTATTGAGACACCCAAAAATGAGTTGGGGATATGTTATGATGCAGAAGATATTTCACTTAGATTACAACTCGGGTTCCAGAGTAAAGTGGACATTCTGGTTGCTACTCCCGGAAGGTTGATCGATCATATCAATACCACTAAAGGATTCACACTTGAGCATCTTCATTACCTCGTAGTTGATGAAACAGATCGTTTACTAAGGGAAGCCTATCAGTCATGGCTACCTACAGTTCTTGAATTGACATCCTTTAATGATGAATTATCAAACTCTTCTGTTCCCTTCAGTTTTGGTGCATTAAGAACCAGAAGGAGATGTGGTATAGAGAGAGGATTTAAAGGTAAATATTTTCCCAGGCTGGCAAAGATGATTCTATCCGCCACCATCTCTCAGGATCCAAGTAAACTTGTTCAGCTCCATCTGCATCATCCACTATTCTTGAAAGCTGGGCAAATGCGTTATCAGCTTCCAGAAAATCTTGAATCATACAAAATGATTTGTGAATCAAATCTAAAGCCATTGTATTTGGTTGCACTCCTGCAAACTTTGGACAGTGAGAAATCCATTGTTTTTACGAAATCTGTGGATTCAACTCATCATCTATGCATGTTATTGCATTGTTTCTCTGACTTGCAAATTTCTATCAAAGAATATTCCAGTCTTCAACGTCAAGCTGTTAGAAGTAAAACCTTGAAGGCATTTAGGAAAGGAAGGTTCCAGGTGCTGGTTTCCTCTGACGCAATGACCCGTGGGATGGATGTTGAAGGGGTGAGAAATGTTATCAATTACGATATGCCTAGATACATAAAGACATACATTCATCGGGCAGGTCGGACTGCAAGAGCTGGCCACAATGGACGCTGCTTCACATTGCTATCTAAAGAAGAGGTTAGGAAGTTCAACATGTTGTTGCGGAAGGCAGATAATAACTCTTGCTCTGAGTACTCTGTCTCTGCCAGTGTGATTGAGCCGATTAGTGCCATTTATCCTTCAGCCCTGAAGAAATTTAAGGAGACATTTTCGGAAATACGGAAGAGATATGCAAAAGCTAGAAAAGAGCATGAAACGAAGGACAGAAAGGAATAA 1527 0.4145 MGEKRETNIPVLPWMRDPVDISRFQHQRLETLPCLDARLKIALQSLCISELFPVQVAVWQETIGPGNFERDLCINSPTGSGKTLAYALPIVQKLSTRVIKCLRALVVLPTRDLAVQVKEVFDPLASAVGLSVGLAVGQSSIADEIAELIETPKNELGICYDAEDISLRLQLGFQSKVDILVATPGRLIDHINTTKGFTLEHLHYLVVDETDRLLREAYQSWLPTVLELTSFNDELSNSSVPFSFGALRTRRRCGIERGFKGKYFPRLAKMILSATISQDPSKLVQLHLHHPLFLKAGQMRYQLPENLESYKMICESNLKPLYLVALLQTLDSEKSIVFTKSVDSTHHLCMLLHCFSDLQISIKEYSSLQRQAVRSKTLKAFRKGRFQVLVSSDAMTRGMDVEGVRNVINYDMPRYIKTYIHRAGRTARAGHNGRCFTLLSKEEVRKFNMLLRKADNNSCSEYSVSASVIEPISAIYPSALKKFKETFSEIRKRYAKARKEHETKDRKE* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte11g00002 508 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 322 472 IPR001650 -
Pte11g00002 508 CDD SF2_C_DEAD 307 439 - -
Pte11g00002 508 Gene3D - 18 305 IPR027417 -
Pte11g00002 508 PANTHER RNA HELICASE 41 479 - -
Pte11g00002 508 SMART ultradead3 47 310 IPR014001 -
Pte11g00002 508 CDD DEADc_DDX51 39 294 - -
Pte11g00002 508 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 102 451 IPR027417 -
Pte11g00002 508 Gene3D - 306 508 IPR027417 -
Pte11g00002 508 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 63 294 IPR014001 -
Pte11g00002 508 Coils Coil 480 500 - -
Pte11g00002 508 Pfam Helicase conserved C-terminal domain 319 430 IPR001650 -
Pte11g00002 508 SMART helicmild6 349 430 IPR001650 -
Pte11g00002 508 Pfam DEAD/DEAH box helicase 53 283 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte11g00002 Pte-Chr11 110014 122894 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte11g00002 57 445 Eukaryotic Initiation Factors Gene Family AT3G13920 22.622 1.08e-26 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte11g00002 K14807 - qsa:O6P43_013012 763.451