Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01788 ATGGAGTGGGATAGTAGCAATTCGGATCTGAGTGGTGATGAAGAAGAAGAAGACAGCTTCTTGCTTAACGATGACGGTGGTATTGGGCCCCTTCCTTTCCCCGTTGAGAACTTGCTTCAGAGCTCTCCTTGTGGGTTTGTGGTAACAGATGCTCTTGAACCTGACCATCCTATCATATATGTCAACACTGTGTTCGAAATGGTTACTGGCTATAGAGCTGAGGAGGTACTTGGTCGTAATTGCCGTTTCTTGCAATGTCGAGGTCCATTTGCTAAGAGAAGGCATCCATTGGTGGATTCAACTGTAGTTTCAGGAATACGGAGATGTCTTCAAGAAGGGATTGAGTTCCAAGGCGAATTGTTGAACTTTAAGAAAGATGGGTCTCCACTGATGAACAGATTGCGTCTGACACCAATATATGGAGATGATGAGACTATCACACATATCATTGCAATTCAGTTCTTCTCGAAAGCAAACATTGACCTTGGTCCAGTGCCTGGTTCTACTATTAAAGAATCTGCGAAACCATCTGATCAATTTCATTCTTCAATACGCCCCTTTCGTGTGGGGGAGCTTAATGTTTCTCAAGGAGTTTGTGGAATATTTCAATTGAGTGACGAGGTATTGTCGCTGAAGATACTTTCACGTTTAACTCCAAGAGATATTGCATCTGTTAGTTCAGTATGTAGGCGATTTTATGAGCTGACAAAGAATGAAGACCTCTGGAGGATGGTATGTCAAAATGCATGGGGTGCTGAGACCACCCGTGTCTTGGAGACCGTACCTGGTGCAAAGAGACTTGGATGGGGTCGTCTGGCAAGGGAATTGACTACTCTTGAAGCAGCAGCTTGGAGGAAGTTGACAGTTAGAGGTGCTGTTGAACCCTCACGTTGTAATTTTGGTGCTTGTGCAGTTGGCAATCGAGTTGTTCTTTTCGGTGGTGAAGGGGTTAACATGCAGCCTATGAATGATACGTTTGTGTTGGATTTAAACTCAAGTAACCCTGAGTGGCAACATGTTCAAGTGAGCTCCCCTCCTCCTGGTCGCTGGGGCCATACTCTTTCTTGTGTTAATGGTTCTCATCTGGTCCTCTTCGGAGGCTGTGGAACACAGGGCTTGATGAATGATGTTTTCCTTTTGGACCTAGACGCAAACCCTCCAACTTGGCGTGAAATCTCTGGAATGGCTCCTCCACTTCCAAGATCATGGCATAGCTCCTGTACCTTAGATGGTACAAAATTGATAGTTTCTGGTGGATGTGCTGACTCTGGAGTACTCCTAAGTGATACTTATCTTCTTGATCTTTCAATGGAGAAACCTGTCTGGAGAGAGATACCAGCCTCATGGACCCCACCTTCCCGATTGGGTCACACACTGTCCGTTTATGGTGGAAGGAATATACTGATGTTTGGCGGTCTGGCGAAGAGTGGTACCCTTCGGTTCCGATCAAGTGATGCATATACAATGGACTTGAGTGAGGAGGAACCTTGTTGGAGATGTATCACCGGGAGTAGCATGCCTGGTGCTGGAAATCCAGGAGGGGTGACCCCTCCACCTAGACTTGACCATGTAGTTGTGAGTCTTCCTGGTGGGAGAATTCTCATCTTTGGTGGCTCCGTTGCTGGACTTCACTCAGCCTCACAGCTTTACATCCTAGATCCAACAGATGAGAAACCTACCTGGAGAATACTGAATGTGCCAGGGAAGCCCCCAAGATTTGCTTGGGGTCATAGTACTTGTGTGGTTGGAGGAACCAGGGCCATTGTCTTAGGGGGTCAGACTGGAGAGGATTGGATGCTGAGTGAGCTTCACGAGCTTTCTCTAGTAAGTTCTACAATCGATTCTTCTCCCATGGAAGAGCACCGTAGCTTTTGTTAA 1878 0.4649 MEWDSSNSDLSGDEEEEDSFLLNDDGGIGPLPFPVENLLQSSPCGFVVTDALEPDHPIIYVNTVFEMVTGYRAEEVLGRNCRFLQCRGPFAKRRHPLVDSTVVSGIRRCLQEGIEFQGELLNFKKDGSPLMNRLRLTPIYGDDETITHIIAIQFFSKANIDLGPVPGSTIKESAKPSDQFHSSIRPFRVGELNVSQGVCGIFQLSDEVLSLKILSRLTPRDIASVSSVCRRFYELTKNEDLWRMVCQNAWGAETTRVLETVPGAKRLGWGRLARELTTLEAAAWRKLTVRGAVEPSRCNFGACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVQVSSPPPGRWGHTLSCVNGSHLVLFGGCGTQGLMNDVFLLDLDANPPTWREISGMAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTYLLDLSMEKPVWREIPASWTPPSRLGHTLSVYGGRNILMFGGLAKSGTLRFRSSDAYTMDLSEEEPCWRCITGSSMPGAGNPGGVTPPPRLDHVVVSLPGGRILIFGGSVAGLHSASQLYILDPTDEKPTWRILNVPGKPPRFAWGHSTCVVGGTRAIVLGGQTGEDWMLSELHELSLVSSTIDSSPMEEHRSFC* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01788 625 Pfam Kelch motif 521 568 IPR011498 GO:0005515
Pte10g01788 625 SUPERFAMILY PYP-like sensor domain (PAS domain) 42 153 IPR035965 -
Pte10g01788 625 ProSiteProfiles PAS repeat profile. 35 113 IPR000014 -
Pte10g01788 625 FunFam Putative LOV domain-containing protein 479 612 - -
Pte10g01788 625 CDD PAS 42 152 IPR000014 -
Pte10g01788 625 SUPERFAMILY F-box domain 190 262 IPR036047 GO:0005515
Pte10g01788 625 Gene3D - 278 428 IPR015915 GO:0005515
Pte10g01788 625 Gene3D - 198 245 - -
Pte10g01788 625 FunFam Putative LOV domain-containing protein 274 478 - -
Pte10g01788 625 MobiDBLite consensus disorder prediction 1 23 - -
Pte10g01788 625 Pfam PAS domain 43 153 IPR000014 -
Pte10g01788 625 Gene3D PAS domain 28 164 - -
Pte10g01788 625 NCBIfam PAS domain S-box protein 37 152 IPR000014 -
Pte10g01788 625 Pfam Galactose oxidase, central domain 361 408 - -
Pte10g01788 625 Pfam Galactose oxidase, central domain 414 462 - -
Pte10g01788 625 CDD F-box_AtADO-like 200 246 - -
Pte10g01788 625 MobiDBLite consensus disorder prediction 7 22 - -
Pte10g01788 625 SUPERFAMILY Kelch motif 284 502 IPR015915 GO:0005515
Pte10g01788 625 Gene3D - 429 625 IPR015915 GO:0005515
Pte10g01788 625 FunFam Adagio protein 1 198 245 - -
Pte10g01788 625 SMART fbox_2 204 245 IPR001810 GO:0005515
Pte10g01788 625 Pfam F-box-like 209 247 IPR001810 GO:0005515
Pte10g01788 625 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 14 610 - -
Pte10g01788 625 ProSiteProfiles F-box domain profile. 212 245 IPR001810 GO:0005515
Pte10g01788 625 Pfam Galactose oxidase, central domain 297 347 - -
Pte10g01788 625 FunFam Adagio protein 1 33 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01788 Pte-Chr10 36290513 36295933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01788 45 154 AGC Kinase Gene Family AT5G58140 33.636 9.31e-14 72.8