Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01759 CCACCTCTTACTGATGAAAGACCATTGGTTTCGCCATTGAGACCAAGCATTTCTGTCGTAGTGGGTGTATTGGCCTCCATGTTCTCCATTATATTTCTTCTCCTTCTTTATGCTAAACACTGTAAGCGTGGGACCGTTGTCATCGTCCATGGTTACAGTGGGAACCCAAATGCACATGGAGGAAGAAAGAACTCTGGCATTGACCGGGCTGTGATCGAGTCTTTGCCCATTTTCAGATTCGCTTCGCTTTCGGGTCAGAAAGATGGGCTTGAATGTGCTGTTTGTCTCACTCAGTTTGAACCCACTGAGGTTCTCAGGTTGCTTCCCAAGTGTAAGCATGCTTTCCATGTCGAATGCGTCGATACTTGGCTCGACGCTCACTCCACTTGTCCTCTTTGCCGATACCGGGTCGATCCGGAAGACATTCTTCTTGTTGAGGATCCGAAGATCCTCTCGTCTCCTGCTTCATCTGCACCGTCAAATGCAAACCGTGAGGCCGACAGTGCCCCATCAGTGAAGAGGAAGAGTGAGTCTGTGGCCTTGGGTTGCTTCGACCGGCCCAGAAAAGACGGATTATTGTTGAACGAGGTGAGAACAACAGCAGGTTTAGAACCGCGCAGGGTGGAGCACCGGATCCTTGTCTCACCAAGCGGGTACCACAAGCAAAGATGGAGCGATGTACACACTTCAGATCTTCTGTATCTACGGTCAGAGATGCTAATTACTGACAGC 732 0.4986 PPLTDERPLVSPLRPSISVVVGVLASMFSIIFLLLLYAKHCKRGTVVIVHGYSGNPNAHGGRKNSGIDRAVIESLPIFRFASLSGQKDGLECAVCLTQFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLVEDPKILSSPASSAPSNANREADSAPSVKRKSESVALGCFDRPRKDGLLLNEVRTTAGLEPRRVEHRILVSPSGYHKQRWSDVHTSDLLYLRSEMLITDS 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01759 244 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 6 239 - -
Pte10g01759 244 SMART ring_2 92 133 IPR001841 -
Pte10g01759 244 Pfam Ring finger domain 91 134 IPR001841 -
Pte10g01759 244 ProSiteProfiles Zinc finger RING-type profile. 92 134 IPR001841 -
Pte10g01759 244 MobiDBLite consensus disorder prediction 153 167 - -
Pte10g01759 244 SUPERFAMILY RING/U-box 70 139 - -
Pte10g01759 244 CDD RING-H2_EL5-like 91 134 - -
Pte10g01759 244 MobiDBLite consensus disorder prediction 153 173 - -
Pte10g01759 244 FunFam RING-H2 finger protein ATL43 67 141 - -
Pte10g01759 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 141 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01759 Pte-Chr10 36001127 36002041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01759 9 243 C3H Transcription Factor Family AT5G05810 50.831 3.40e-75 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01759 K19041 - qsa:O6P43_022402 309.686