Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01745 ATGGCCGTAGGAGACCCGCACAGTCCTCGCACTGTCCATAATGTTTTTTCCGACTTCGTAGGTCGAAGATCCGCCTTGGTCAAAGCTCTCACCACCGACGTTGAAACTTTGTTTGCACGATGTCATCCTGGAAGGGAGAATCTTTGCCTGTATGGCTTTCCTAATGGGAAATGGGAAGTGAACTTGCCTCCTGAAGAAGCTCCTTCTGACCTCCCAGAACCTGCAGTAGGCATAAACTTTGCTAGAGATGGGATGCCAGAGACAGAATGGCTATATCTGGTTGCTGTTCACAGTGACAGTTGGTTACTTGCAACTGCTTTCCATAGTGCGGGACAACATAGACTTGATAAGGATGACAGGGAACGCCTTTTCTCTATGATTAATGATCTTCCCACAATAGCTGAGGTTTTGACTGAAGAAGCTGCAAAGAAACAGTCAGAGGAGAATTCAGAGTCTAGCCACACCCGTAACAAATCAAAATCCGGTTCAATGGGGGGAGGATCTCAATCTGGGAACTATTCTGAAGGTTCTCAAGGGAAAGATAAGGACAAGTCAGATGAAGAAGGTGTTGATGAGCACGGGAATACCTTGTGTGGGATGTGTGGGCAGAGCGAGACTTCTGAGGCGTTCTGGTTATGTTGTAAGACATGCGAGGAATGGTTCCACGGGAAGTGTGTGAGGGTCTCACCTGCTATGGCTGAACGAATGCAGAAGTACGAGTGCTTGTTATGCATTCACAATAGAGCTCGACCTTGA 756 0.4749 MAVGDPHSPRTVHNVFSDFVGRRSALVKALTTDVETLFARCHPGRENLCLYGFPNGKWEVNLPPEEAPSDLPEPAVGINFARDGMPETEWLYLVAVHSDSWLLATAFHSAGQHRLDKDDRERLFSMINDLPTIAEVLTEEAAKKQSEENSESSHTRNKSKSGSMGGGSQSGNYSEGSQGKDKDKSDEEGVDEHGNTLCGMCGQSETSEAFWLCCKTCEEWFHGKCVRVSPAMAERMQKYECLLCIHNRARP* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01745 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Pte10g01745 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 245 IPR013083 -
Pte10g01745 251 MobiDBLite consensus disorder prediction 156 176 - -
Pte10g01745 251 Pfam Alfin 11 138 IPR021998 GO:0006355|GO:0042393
Pte10g01745 251 SMART PHD_3 197 245 IPR001965 -
Pte10g01745 251 MobiDBLite consensus disorder prediction 140 155 - -
Pte10g01745 251 PANTHER CPG BINDING PROTEIN 8 250 IPR045104 GO:0006355|GO:0042393
Pte10g01745 251 SUPERFAMILY FYVE/PHD zinc finger 187 248 IPR011011 -
Pte10g01745 251 MobiDBLite consensus disorder prediction 140 189 - -
Pte10g01745 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Pte10g01745 251 Pfam PHD-finger 198 245 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01745 Pte-Chr10 35913828 35917897 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01745 7 252 Alfin-like Transcription Factor Family AT3G42790 53.441 6.14e-82 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pte10g01745 Alfin 3.2e-57 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01745 K26274 - cpap:110817645 315.849