Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01730 ATGGACAGTGTCTTCCTACTTCCAGATGGGGATCGAGCCTTTTTTCTGCGATCCATATTAGTGCGGCCTTTTGGTGCCCTATACATCTGTCTCTGGGAATATAATCCTCACCCATTGCATTGTTTAATCTACAAGGATGGTTTCTTTTGCGGTGATGATAATCAACCAAGCAGCTCCTCGGGAAGCAGTGGAGTTCACTGGTTGTTCAATGAATATGCTAGGACTGCAATATCCATTGATGTCAATAACGACCGTATCCCCGGATTAGCTCTGAAGAACAACCATCCTTATATAGAACTTCAAGGCTTGGACCTTCTGGCAAAGGCGTCAAGTGATGCACAAAGACAATTCTATCAGACAGCAGTTTTCATGGCATGCAACCTTGGAGAGATTGAGCTTGGTTTTTCCAGCATACCTCAGGTGGATAAGCAAAGGGCAATGAGGAATTTATTTCCAGATGACTTCCGTAGACCTTGCCACCCACGTGAATGGAATCCACCTTCATCATCAGCTTCCTTAATGAGATCATTTTCCACAAATAGCCTCGACTACTCATATCTCCTCTTCAATGTTCCCAGTACCATTTCTCCAACTCCGGAAATACTAAGAGAGATACCCACAACGCAAGAACAATTAACAACCATAGCCAGTAGTAGATATCAGCAAGCCCTTCACGCATTTGCTCAACTTCCTAACACTCTCTCCAACCTAGAGAATGAAGAGGCTGCAGCAGCAAGAGCTCTGCTTGCTGCCTTTTCTCCACCTACTTCAACTTCATCATCCGATCATGTACCTCCGCAGGAGAACTTAAGCTATAGTAGTCAAAGGGTAACATCAGAAGCCTCTGCTTTCAAGAATTACAGCCAATCAGATCTAGGTCAGAGCAGACCCCTAGTGAGATCAACCATAGAAAGGAAAAGCATGATAAAGAGATCAATTGCATTCTTTAGAAACTTAAATTTAATGAGACTTCAGGAACGTTCCCAAATAACCAGAACCACTGCTGCTCAGATGCCCCATGTGATACGAGAGAGAAGACGGCGAGAGAAGCTCAATGAGAACTTTCAGTCACTGAGAGAATTGCTTCCTCCTGGGACAAAGAAACACAAAGGTTCAATATTGATTTCAGCCAAGCACACCTTGGCCTCTTTGATGGGTCAAGTTGAAGAGCTTAGCAAGAGAAATGAGCAGCTAGAGGAGCACCTCACAGTGCCAGTAGTCAGGAGAGAAGCTAAGAAAGAAGCAGAAACAAGTTCCCTTAGTGAAAGACTCATTGTTAGAACTTCCATTCCGACTGAATCAACCTCTGAAGGAAGATTCATGACAGACTTGCAAGTGACACTAAGACCGCGATACCGTCCATTTGATTTGTTGATTTGCCTATTGGAATTCATAAAGCAAGATCCAAATGTAACATTAATCTCTACTGATGCTTATACTCAATTTGAGGAATCAACTACCGTTAACCACGTAACCTTGAGGTTACTCATTGAGGCAATTTCCGGAATAGTTCAGATGACTACTTTTTGA 1530 0.4314 MDSVFLLPDGDRAFFLRSILVRPFGALYICLWEYNPHPLHCLIYKDGFFCGDDNQPSSSSGSSGVHWLFNEYARTAISIDVNNDRIPGLALKNNHPYIELQGLDLLAKASSDAQRQFYQTAVFMACNLGEIELGFSSIPQVDKQRAMRNLFPDDFRRPCHPREWNPPSSSASLMRSFSTNSLDYSYLLFNVPSTISPTPEILREIPTTQEQLTTIASSRYQQALHAFAQLPNTLSNLENEEAAAARALLAAFSPPTSTSSSDHVPPQENLSYSSQRVTSEASAFKNYSQSDLGQSRPLVRSTIERKSMIKRSIAFFRNLNLMRLQERSQITRTTAAQMPHVIRERRRREKLNENFQSLRELLPPGTKKHKGSILISAKHTLASLMGQVEELSKRNEQLEEHLTVPVVRREAKKEAETSSLSERLIVRTSIPTESTSEGRFMTDLQVTLRPRYRPFDLLICLLEFIKQDPNVTLISTDAYTQFEESTTVNHVTLRLLIEAISGIVQMTTF* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01730 509 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 337 405 IPR036638 GO:0046983
Pte10g01730 509 CDD bHLH_AtbHLH_like 340 392 IPR045239 -
Pte10g01730 509 Coils Coil 341 361 - -
Pte10g01730 509 Coils Coil 381 401 - -
Pte10g01730 509 Pfam Helix-loop-helix DNA-binding domain 340 379 IPR011598 GO:0046983
Pte10g01730 509 Gene3D - 335 407 IPR036638 GO:0046983
Pte10g01730 509 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 109 499 IPR044658 -
Pte10g01730 509 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 335 384 IPR011598 GO:0046983
Pte10g01730 509 SMART finulus 341 390 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01730 Pte-Chr10 35779440 35782373 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01730 1 499 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 35.860 4.05e-59 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte10g01730 HLH 2.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01730 - - qsa:O6P43_002748 384.03