Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01724 ATGACACCAAGTAACCGTTATCGTTTATCTTCGATTTCTACAGAGGTTAGCAACGATGATCATAGCAATTATGAACACCTTAGTGCAAACCCTCAAGACTCATCGTCATCTTCTTCTTTGTCATATCCTCTTGGCTTTATCCCAGATCAAGATCATGGAGGATCTTACCATTGGAAACTGAACAAGTACTATGAAGAGAAAAATGTTTCTCCATGTGAATCATGCAATCATGAGATTGAAAATAAAGAGAGAAAGACTGGTCTCAAATTGACTATCAAGAAGAGAGATTACAAGAGGGAAAACCAAACTCACAATGGCTCTTCCAAGTGGATGTCTTCAAAGATGAGGATGACACGAAAGATGATGCATACGGATCAAACAGTTGCTGATATACCGCAGACTTCTTTGATGAAAGTCGAAGATCAGAAACAGCAGTCATCATCTCAAGAAACTGATAACAACAGCAGTATTGACAATTTTTCAAACAATAGCACCATTACTATTAGGGTTTGTGCTGATTGCCACACCACTAAGACTCCTCTATGGAGAAGCGGACCAAGAGGCCCTAAGTCACTTTGCAACGCCTGTGGGATTCGACAAAGAAAGGCAAGACGCGCCATGGCTGCATCTGCAGCATCAACAAATGGCTCGATTATGATGGCGGAGACATCACGTGTAAAGGGTAAGATGCTGCACAAAGAGAAGAAGTCAAAAACCAGATGTACGCCACAATTCAAGAGAAGGCGCAAACCTGACACTTCGCGAAAGAAGTTTTGCTTTGAGGAATTCATGATGAACTTAAGCAATAACCTCACTTTACAACAAGTATTCCCTCAGGACGAGAAGGAAGCAGCGATCCTGCTAATGTCTTTATCCTATGGCCTTGTCCATGGTTGA 897 0.4169 MTPSNRYRLSSISTEVSNDDHSNYEHLSANPQDSSSSSSLSYPLGFIPDQDHGGSYHWKLNKYYEEKNVSPCESCNHEIENKERKTGLKLTIKKRDYKRENQTHNGSSKWMSSKMRMTRKMMHTDQTVADIPQTSLMKVEDQKQQSSSQETDNNSSIDNFSNNSTITIRVCADCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAASAASTNGSIMMAETSRVKGKMLHKEKKSKTRCTPQFKRRRKPDTSRKKFCFEEFMMNLSNNLTLQQVFPQDEKEAAILLMSLSYGLVHG* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01724 298 Pfam GATA zinc finger 171 204 IPR000679 GO:0006355|GO:0043565
Pte10g01724 298 ProSitePatterns GATA-type zinc finger domain. 171 196 IPR000679 GO:0006355|GO:0043565
Pte10g01724 298 Gene3D - 169 207 IPR013088 GO:0006355|GO:0008270
Pte10g01724 298 MobiDBLite consensus disorder prediction 137 160 - -
Pte10g01724 298 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 298 - -
Pte10g01724 298 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 167 208 - -
Pte10g01724 298 ProSiteProfiles GATA-type zinc finger domain profile. 169 201 IPR000679 GO:0006355|GO:0043565
Pte10g01724 298 SMART GATA_3 165 217 IPR000679 GO:0006355|GO:0043565
Pte10g01724 298 CDD ZnF_GATA 170 198 IPR000679 GO:0006355|GO:0043565
Pte10g01724 298 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01724 Pte-Chr10 35661189 35663190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01724 83 299 C2C2-Gata Transcription Factor Family AT4G26150 36.680 9.60e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pte10g01724 GATA 3.7e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01724 - - qsu:112025651 241.506