Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01718 ATGGTGAGCCCTGAAGCTCCAACAACCACAAAAGTTCCTTGCGATTTCTGCAGCCATCACACAGCTCTTCTCTACTGCAGAGCTGACTCTGCCAAGCTTTGTTTGTTTTGTGACCAGCACGTTCACTCCGCCAACTTGCTTTCTCGCAAGCACTCCCGCTCGCAGATCTGCGATAATTGTAGCTCTCAACCGGGCTCCGTCCGATGCAACACCGACAACCTTGTCCTGTGCCAGGACTGCGATTGGGATGCTCATGCCGCTTGCTCTGTGTCTGCCTCTCATGATCGCTCCCCGATCGAAGGCTTCACTGGATGCCCTTCCGCACTTGAACTTGCTATCAACTTGGGTTTTGATCTCGAAGCCAATATTTCCCGTCAGTCTCAGTCCTGGCCTCTTGTTTCTGAGTATTTCCTTTCTTCTTTACAACCGTGGGTGTATAAATCTGATCATGACTTGGTTGTTCCCACCCCGAATGTGGTGGAATTTTCTGAGCCTTCTAGGGTTGAGGGTCCCGCTGCAATGACGAAGAAACAGAGTCCGGGTTGTGGAAAGTACAGGCAAATTGTATACAAGCAATTGGCGGAGCTGCTCAAGAGGGAATCAACGCTTGGCTGTAACGCTGCCATTGGCAACGATCTCAGTGATGCACATGCTGCTGGAGAGACTTTGAACGCTTGGAGGCCATTGGCGCAGACAAATGTGGATCAAGCATTTGATCTGGGTTTGGGCAATGTTGTTGTTGATGATGGATTTCTGGAAGGACCTGCCGTCGCTCAACCCAAGCCATTTACATCTCTGCTCGTGATTTCTCCTCGTCAAGCTCTAGAACATAAGAAAAATTCCGATGACACCCTTAACTGTAACATGATGTGGGACAGTAATCCTAGCGCCCAGGCAACTCAGATTTGGGATTTTCATTCTGGATGCAAGAGGGATCTCGAAGATGCTAATTCAATGGAATTTTCATATGACCAAAGTGCGGGCATTTTTACAGTCAAGGATTACGGTGAATACATGAAAACAGAGTTTGACGTTAATGCAAAAAGTTTGGAAGATTTCTATGAAACAAGTTGTCCAATTGCCTATGACGACATAGCTTTTTACAATAATATCTCAAATAAAACGAATGCCAGCCAAGGGCCTGCGACATCCCAAAGCAATCAGCTACCTGTAATAAGGGAATCTCCAACTTCAGATCTCACTCCGAACAAAGGTTCTACTGCCAAAGAGACGCAGTTAGTTGAACGTCCTTGCATTGCGAATGGCGGTAACAAGATGACTGAGGAAGCAAGAAGTAAGACTAATATAGAGATATTGGCAGAAAATAGGGGGCATGCAATGCTTCGTTACAAGGAAAAGAAGAAGAACAGGAGATATGAGAAGCTAATACGGTATGAGTCGAGGAAGGCAAGAGCTGATACTAGGAAGCGAGTCAAGGGTCGATTTGTGAAGGCTGTTGAAGCACCCATATAA 1473 0.4657 MVSPEAPTTTKVPCDFCSHHTALLYCRADSAKLCLFCDQHVHSANLLSRKHSRSQICDNCSSQPGSVRCNTDNLVLCQDCDWDAHAACSVSASHDRSPIEGFTGCPSALELAINLGFDLEANISRQSQSWPLVSEYFLSSLQPWVYKSDHDLVVPTPNVVEFSEPSRVEGPAAMTKKQSPGCGKYRQIVYKQLAELLKRESTLGCNAAIGNDLSDAHAAGETLNAWRPLAQTNVDQAFDLGLGNVVVDDGFLEGPAVAQPKPFTSLLVISPRQALEHKKNSDDTLNCNMMWDSNPSAQATQIWDFHSGCKRDLEDANSMEFSYDQSAGIFTVKDYGEYMKTEFDVNAKSLEDFYETSCPIAYDDIAFYNNISNKTNASQGPATSQSNQLPVIRESPTSDLTPNKGSTAKETQLVERPCIANGGNKMTEEARSKTNIEILAENRGHAMLRYKEKKKNRRYEKLIRYESRKARADTRKRVKGRFVKAVEAPI* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01718 490 CDD Bbox1_BBX-like 13 56 - -
Pte10g01718 490 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 13 488 - -
Pte10g01718 490 MobiDBLite consensus disorder prediction 377 408 - -
Pte10g01718 490 Pfam B-box zinc finger 54 99 IPR000315 GO:0008270
Pte10g01718 490 ProSiteProfiles CCT domain profile. 443 485 IPR010402 GO:0005515
Pte10g01718 490 ProSiteProfiles Zinc finger B-box type profile. 9 56 IPR000315 GO:0008270
Pte10g01718 490 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Pte10g01718 490 SMART bboxneu5 57 99 IPR000315 GO:0008270
Pte10g01718 490 SMART bboxneu5 9 56 IPR000315 GO:0008270
Pte10g01718 490 Pfam CCT motif 443 485 IPR010402 GO:0005515
Pte10g01718 490 CDD Bbox1_BBX-like 56 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01718 Pte-Chr10 35607358 35610518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01718 6 487 C2C2-CO-like Transcription Factor Family AT2G33500 37.988 1.61e-91 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pte10g01718 zf-B_box 3.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01718 - - qsa:O6P43_023803 471.47