Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01714 ATGTCTCCTGTGTCTATCAACAAAGGTTGTAACTTTAATGGTATGGAAGGCAAGCACTTGCCTGCGACACTTACTTCTCACCAAGACGTTGTCAAGGACCCTACTGCCTTTTGGGACAGTCTCAGGCGCTTTCACTTCCTTATGGGCACCAAATTTATGATTCCTGTAATTGGAGGAAAAGAATTAGATTTGCACGTTCTCTACGTAGAGGTTACAAGAAGGGGTGGTTATGAAAAGGTTATAGCTGACAAGAAGTGGAGGGAAGTAGGTGATATATTCATGTTCTCTCCTACAACCACAAGTGCTTCTTTCGTCTTGAGGAAACACTATTGCAGTCTTCTTTATCATTATGAACAAGCTCACTTCTTCAAGGCGCAGGGTCTCATTCATAGTCCAACTGCGTTTTCTGCTACCAATCGGCAATGGAGGCCAGAATTAGCTATTGTGGAATATTCCCCAAAGCCGATAAATGAATTTCGAGATTCGCATGTTGAAGTAGTTGGAACAATTGACGGAAAATTTGACTGTGGCTATCTGGTATCTGTGAAACTGGGTTCTGAGGTTCTTCAAGGAGTTCTGTATCATCCAGAACTGCACCGACCAGTTCCTTCCACGCAATTGTTATCATTTGAAACTGCCATTGTGCCATACAAAAGCGAAACGAACCATGGTCGCGGTCTCGGTCGCGGTCATCATAGGAAAAGAAGAAAAAGAGGAGATCCTAACTATCCAAAGTCGACCAGAAGTGGGTATAACTTTTTCTTTGCTGAGAAGCACTATATGCTGAAAGCTGTCTATCCCAAGCAAGAAAGAGAGTTCACTAAAATGATTGGCCAGTCATGGAACAGTCTTACTTTAGAAGAGAGGATGGTTTACCAGAACACTGGCTTGAGAGACAAGGAAAGATACAATAGAGAAGTGAGAGAGTATACAGAGAAAATGAAGCTGAACCAGACAAGTAAATAA 966 0.4234 MSPVSINKGCNFNGMEGKHLPATLTSHQDVVKDPTAFWDSLRRFHFLMGTKFMIPVIGGKELDLHVLYVEVTRRGGYEKVIADKKWREVGDIFMFSPTTTSASFVLRKHYCSLLYHYEQAHFFKAQGLIHSPTAFSATNRQWRPELAIVEYSPKPINEFRDSHVEVVGTIDGKFDCGYLVSVKLGSEVLQGVLYHPELHRPVPSTQLLSFETAIVPYKSETNHGRGLGRGHHRKRRKRGDPNYPKSTRSGYNFFFAEKHYMLKAVYPKQEREFTKMIGQSWNSLTLEERMVYQNTGLRDKERYNREVREYTEKMKLNQTSK* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01714 321 Gene3D - 22 130 IPR036431 GO:0003677
Pte10g01714 321 Gene3D High mobility group box domain 229 321 IPR036910 -
Pte10g01714 321 SMART bright_3 32 123 IPR001606 GO:0003677
Pte10g01714 321 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 13 318 - -
Pte10g01714 321 MobiDBLite consensus disorder prediction 220 245 - -
Pte10g01714 321 SUPERFAMILY ARID-like 25 128 IPR036431 GO:0003677
Pte10g01714 321 CDD HMG-box_AtHMGB9-like 244 310 - -
Pte10g01714 321 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 244 311 IPR009071 -
Pte10g01714 321 SMART hmgende2 243 312 IPR009071 -
Pte10g01714 321 ProSiteProfiles ARID domain profile. 31 122 IPR001606 GO:0003677
Pte10g01714 321 SMART ARID_2 28 118 - -
Pte10g01714 321 Pfam HMG (high mobility group) box 244 310 IPR009071 -
Pte10g01714 321 Pfam ARID/BRIGHT DNA binding domain 36 118 IPR001606 GO:0003677
Pte10g01714 321 CDD ARID_HMGB9-like 33 118 IPR045303 GO:0003677
Pte10g01714 321 MobiDBLite consensus disorder prediction 227 241 - -
Pte10g01714 321 SUPERFAMILY HMG-box 241 314 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01714 Pte-Chr10 35549037 35551809 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01714 18 316 ARID Transcription Factor Family AT1G76110 59.091 2.83e-119 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Pte10g01714 ARID 2e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01714 - - cave:132190320 438.728