Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01712 ATGCATTTCACCAAGCTGGATGACTCTCCTATGTTTCGCAAGCAGATACAAAGCTTGGAGGAAAGTGCAGAATCTTTGAGAGAAAGAAGTTCAAAGTTTTATAAAGGCTGTAGAAAGTACACTGAAGGTCTGGGGGAAGCATATGATGGAGATATTGCTTTTGCAAGTGCTCTAGAAGCTTTTGGTGGGGGGCATAATGATCCCATTAGTGTGGCTTTTGGAGGGCCTGTCATGACTAAATTTACAATAGCATTGAGAGAAATTGGGACATACAAGGAGGTTCTGCGGTCTCAGGTGGAGCATATGCTAAATGAAAGATTGCTCCAATTTGTTAATTATGACCTGCACGAAGTGAAGGAAGCACGTAAGCGGTTTGATAAAGACACTCTTCTTTATGATCAGGCCCGTGAAAAATTTCTGTCACTGAGAAAAGGCACAAAGCCTGATGTAGCTGCCACTCTAGAGAATGAGCTGCATAGTGCAAGGACAACCTTTGAGCAAGCCCGCTTTAATCTTGTGACTGCGCTATCGAATATTGAGGCTAAAAAAAGATTTGAATTTTTGGAAGCAGTCAGTGGCACTATGGATGCACATCTCCGTTACTTCAAGCAGGGCTATGAGTTGTTGCATCAAATGGAGCCATATATTAACCAGGTCTTAACTTATGCACAACAGTCAAGAGAAAGGTCAAACTATGAGCAAGCAGCGTTAAATGAAAGGATGCAAGAGTACCAACGCCAAGTTGATAGAGAGAAAAGGTGGTCTCCCGTTGGTTCTAATGGATCTCCTAATGGAGATGGTATACAAGCAATTGGTAGAAGTTCACATAAAATGATAGAGGCAGTCATGCAATCTGCTGCAAAGGGAAAGGTCCAAACAATTAGGCAAGGTTATCTTTCTAAGCGCTCATCCAATTTAAGGGGTGATTGGAAAAGGAGATTTTTTGTTCTTGACAGTCGGGGCATGCTGTACTACTATCGTAAGCAGTCTAGCAAACCATCTGGATCTGGCAGTCAACTTTCTGGTCAGAGAAATAGTTCTGAACTTGGTTCCGGACTCCTGAGTCGGTGGCTATCTTCTCATCATCATGGTGGGATACATGATGAGAAATCAGTTGCTCACCACACAGTTAACCTGCTTACATCAACAATTAAGGTCGATGCTGACCAGTCAGATCTAAGATTTTGCTTCAGGATTATTTCACCTACAAAAAATTACACCTTGCAGGCAGAGAGTGCTCTTGATCAAATGGATTGGATTGAAAAGATTACAGGGGTTATTGCCTCCCTGTTAAGTTCTCAGGTTCCTGACAGGTGTCTCTCTGCTAGTCCCATGGGAAGTGGTCATCATCGATCTGCAAGTGAGAGCAGCTCACTGAGTTCCGATTTTGATCACTCTGCTATTGAAGAATATACATCTGAGAGAAGCCTTGCTCATGCAAATCTGGAACGCCCAGTGAGAAATTTACAGCAGCAACGTTCTGGTGCTAAAAATGAAAAGCCAATTGACATACTCCGTAAAGTATGTGGCAATGATAAATGTGCTGATTGTGGTGCCCCTGAACCTGATTGGGCATCATTGAACCTTGGTGTTCTTGTTTGTATTGAATGCTCTGGTGTTCACCGCAATCTTGGTGTACACATATCAAAGGTGAGATCTCTCACTCTGGATGTCAAAGTGTGGGAGCCTTCTGTGATAAATTTGTTTCAGTCCCTTGGTAATGCTTTTGCCAACTCAGTGTGGGAAGAGCTTCTGCAATCAAGAAGTATCATTCCGTTTAATCTTGTCCCACCAAGTTTGAACAAGTCCAATAAGCCACAGGTGCCTTTCATTAGCAAACCATGTCCAACAGATTCTTTATCTGTAAAGGAGAAGTTCATCCATGCAAAGTATGCAGAGAAGCTTTTTGTCCGCAAGCCTAAGGATGATCAGTATCTTTTGCATGTGCCTCAACGAATTTGGGACGGTATTCGTTCTAATGACAAAAAGGCTGTATATCGTCACATTGTGTCTTATGAAGTTGATGTCAATGCTCTATTCGGGCAAACATGCAGCTCTTTAACCCTTGCCAAAGTCATGTTTCTGCAAGAACAGACAAATGTTGATCATAATTCCGGCTGTTCCTCGGGCATATCTGCTGACTTGTTGAATCTGACTGGAGCCAAAGAATGTCTGACTGATGAGAATTCAGATGGTTGTACTCTGCTTCACCTCGCTTGTGAAACTGCTGACATAGGAATGCTGGAGCTCCTCCTGCAGTATGGTGCAAATGTAAATGCCACTGATTTGAGAGGCCGTACGCCGCTTCATCATTGTCTTTCAAAAGGCAGAACAACATTGGCAAGGTTACTTATCTCGAGGGGAGCCAATCTTCGTGCCATTGATGGAGAGGGAAAGACTGCATTTGAACTGGCACTGGAGTCAAACTTCAACGATAGAGAGGTGCTCGGTATATTATCAGATTCAAATGGATGA 2475 0.4299 MHFTKLDDSPMFRKQIQSLEESAESLRERSSKFYKGCRKYTEGLGEAYDGDIAFASALEAFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNERLLQFVNYDLHEVKEARKRFDKDTLLYDQAREKFLSLRKGTKPDVAATLENELHSARTTFEQARFNLVTALSNIEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYQRQVDREKRWSPVGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQSSKPSGSGSQLSGQRNSSELGSGLLSRWLSSHHHGGIHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQVPDRCLSASPMGSGHHRSASESSSLSSDFDHSAIEEYTSERSLAHANLERPVRNLQQQRSGAKNEKPIDILRKVCGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVINLFQSLGNAFANSVWEELLQSRSIIPFNLVPPSLNKSNKPQVPFISKPCPTDSLSVKEKFIHAKYAEKLFVRKPKDDQYLLHVPQRIWDGIRSNDKKAVYRHIVSYEVDVNALFGQTCSSLTLAKVMFLQEQTNVDHNSGCSSGISADLLNLTGAKECLTDENSDGCTLLHLACETADIGMLELLLQYGANVNATDLRGRTPLHHCLSKGRTTLARLLISRGANLRAIDGEGKTAFELALESNFNDREVLGILSDSNG* 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01712 824 Gene3D Arf GTPase activating protein 479 646 IPR038508 -
Pte10g01712 824 SMART ANK_2a 731 760 IPR002110 GO:0005515
Pte10g01712 824 SMART ANK_2a 764 793 IPR002110 GO:0005515
Pte10g01712 824 MobiDBLite consensus disorder prediction 328 347 - -
Pte10g01712 824 Pfam PH domain 294 427 IPR001849 -
Pte10g01712 824 Pfam Ankyrin repeats (many copies) 734 785 IPR002110 GO:0005515
Pte10g01712 824 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
Pte10g01712 824 CDD ArfGap 502 631 - -
Pte10g01712 824 MobiDBLite consensus disorder prediction 441 460 - -
Pte10g01712 824 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 481 645 - -
Pte10g01712 824 SUPERFAMILY ArfGap/RecO-like zinc finger 498 639 IPR037278 -
Pte10g01712 824 MobiDBLite consensus disorder prediction 329 347 - -
Pte10g01712 824 CDD BAR_SFC_plant 14 215 IPR035670 -
Pte10g01712 824 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Pte10g01712 824 SMART PH_update 293 430 IPR001849 -
Pte10g01712 824 SUPERFAMILY Ankyrin repeat 666 812 IPR036770 -
Pte10g01712 824 ProSiteProfiles PH domain profile. 292 428 IPR001849 -
Pte10g01712 824 Gene3D - 710 823 IPR036770 -
Pte10g01712 824 PRINTS HIV Rev interacting protein signature 553 574 IPR001164 GO:0005096
Pte10g01712 824 PRINTS HIV Rev interacting protein signature 511 530 IPR001164 GO:0005096
Pte10g01712 824 PRINTS HIV Rev interacting protein signature 530 547 IPR001164 GO:0005096
Pte10g01712 824 MobiDBLite consensus disorder prediction 249 270 - -
Pte10g01712 824 Gene3D - 285 439 IPR011993 -
Pte10g01712 824 ProSiteProfiles Ankyrin repeat profile. 764 796 IPR002110 GO:0005515
Pte10g01712 824 Coils Coil 227 247 - -
Pte10g01712 824 SMART arf_gap_3 499 644 IPR001164 GO:0005096
Pte10g01712 824 ProSiteProfiles Ankyrin repeat region circular profile. 731 762 - -
Pte10g01712 824 ProSiteProfiles ARF GTPase-activating proteins domain profile. 499 644 IPR001164 GO:0005096
Pte10g01712 824 SMART 5bar 11 218 IPR004148 GO:0005515|GO:0005737
Pte10g01712 824 FunFam ADP-ribosylation factor GTPase-activating protein AGD3 4 251 - -
Pte10g01712 824 CDD PH_ACAP 295 432 - -
Pte10g01712 824 Pfam BAR domain of APPL family 6 232 IPR004148 GO:0005515|GO:0005737
Pte10g01712 824 ProSiteProfiles Ankyrin repeat region circular profile. 764 795 - -
Pte10g01712 824 ProSiteProfiles Ankyrin repeat profile. 731 763 IPR002110 GO:0005515
Pte10g01712 824 SUPERFAMILY PH domain-like 293 444 - -
Pte10g01712 824 PANTHER CENTAURIN/ARF 4 822 IPR045258 GO:0005096
Pte10g01712 824 Pfam Putative GTPase activating protein for Arf 502 639 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01712 Pte-Chr10 35535103 35544859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01712 511 638 C2H2 Transcription Factor Family AT4G21160 40.310 2.62e-21 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01712 K12489 - cave:132179451 1303.12