Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01704 ATGGTAAAGAATATCATTGATATTGGTGGAAGCATGTGCAGTGAAGTGGCTGAACCTCATTATTCATCTAAAACTTATTCTGTATCTTTTCCCGATGACGAAACAAGAAACTCTCCAAGTCAAAAAGCCGAAAATTGTTCAGGCAGCACAAGACTTGGATCGCAGCCAAGTTATGATGTTCGAGACCTGCTTGAGTGTCCAGTTTGCACGAATTTAATGTATCCTCCCATTTACCAGTGCCCAAATGGTCACACCCTGTGTTCAAGCTGCAAGGTCAGAGTGCACAATAGTTGCCCCATGTGCCGCTATGAACTTGGAAATATAAGATGCTTAGCTCTGGAAAGAGTAGCAGTATCTTTGGAACTTCCGTGTAGGTACCATGTTTTTGGTTGTCAAGGCAAACTCCCTTACTACAGCAGGTTATCTCATGAGAAAACTTGCAAATATGGTTACTACAACTGTCCATATGCTGGAGCTGAGTGTGCTGTCACGGGTGATATACCGTTTCTTGTAATGCATCTCAAGAATTTCCACAAAGTGGACATGCACAGTGGATCCACTTTCAACCACAGATATGTCAAAGCCAACCCTGAGGAAATAGAAAATGCTACATGGATGCTAACAGTTTTTAACTGTTTCGATCGACAATTCTGCCTGCACTTCGAAGCTTTCCACATAGGAAATGCACCAGTATACATTGCCATTCTTCGGTACATGGGTGAAGATGAAGAAGCTAAGCAATTCTCTTACAGTCTTGAGGTTGGTGGCAATGGAAGAAAACTTAAATGGCAAGGAATCCCAAGGAGCATCCGTGATAGCCACAGGAAAGTTAGGGACAGTCAAGATGGGCTCATAATTCAGAGAACCTTGGCACTCTATTTTTCTGGGGGTGATGGGACCGAATTGAAATTGAAAGTGACAGGCCGTATCTGGAAAGAGCAACGAGGAACTAGATGA 957 0.4305 MVKNIIDIGGSMCSEVAEPHYSSKTYSVSFPDDETRNSPSQKAENCSGSTRLGSQPSYDVRDLLECPVCTNLMYPPIYQCPNGHTLCSSCKVRVHNSCPMCRYELGNIRCLALERVAVSLELPCRYHVFGCQGKLPYYSRLSHEKTCKYGYYNCPYAGAECAVTGDIPFLVMHLKNFHKVDMHSGSTFNHRYVKANPEEIENATWMLTVFNCFDRQFCLHFEAFHIGNAPVYIAILRYMGEDEEAKQFSYSLEVGGNGRKLKWQGIPRSIRDSHRKVRDSQDGLIIQRTLALYFSGGDGTELKLKVTGRIWKEQRGTR* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01704 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 173 IPR013083 -
Pte10g01704 318 SUPERFAMILY RING/U-box 56 106 - -
Pte10g01704 318 CDD RING-HC_SIAHs 64 102 - -
Pte10g01704 318 FunFam E3 ubiquitin-protein ligase SINAT5-like 175 307 - -
Pte10g01704 318 ProSiteProfiles Zinc finger SIAH-type profile. 119 179 IPR013010 GO:0008270
Pte10g01704 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 118 IPR013083 -
Pte10g01704 318 SUPERFAMILY TRAF domain-like 119 311 - -
Pte10g01704 318 MobiDBLite consensus disorder prediction 27 54 - -
Pte10g01704 318 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 45 313 - -
Pte10g01704 318 FunFam E3 ubiquitin-protein ligase SINAT3 116 174 - -
Pte10g01704 318 Pfam Seven in absentia protein family 108 307 IPR018121 GO:0005737|GO:0006511|GO:0007275
Pte10g01704 318 ProSiteProfiles Zinc finger RING-type profile. 66 102 IPR001841 -
Pte10g01704 318 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 174 307 IPR008974 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01704 Pte-Chr10 35456080 35459228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01704 9 314 C3H Transcription Factor Family AT2G41980 68.730 3.15e-158 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01704 K04506 - pvy:116127032 487.263