Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01699 ATGTCTTCACCTTCCTTCATGAGCAGAACGCCTTTGCCAATGAAAGACGGGGCTCCAAGCTATTATCTGTATCCAGCTCCAGAGGCAACATATGAGGATGTTGTCGTTGACCCCAACCTCTTCATGAATAGCTTGGAGAAGCTTCACGCATCTATGAGAACCAAGTTTATGATACCCATTATTGGGGGAAGAGAGCTTGATTTGCATAAACTGTTTGTAGAAGTGACTAGTCGTGGAGGGATTGAGAAGATTATAAGAGAGAGGAAATGGAAAGAAGTAACTGCAGTTTTCAACTTTCCATCTACTGCTACAAATGCTTCTTTTGTGCTGAGGAAATACTATTCTTCCTTACTTCACCACTACGAGCAGATATACTATTTCAAAGCCAGGGGATGGACCCCCATGTCTGTTGATTCTTCACAAAGTCCATCCACGTCATCAATGTCAGTTCAAAGGACTCCTCCTTTGCGATCATCATCGGGCATAGAGTCAAGTATGGTTCAGCAATCAAGGGTTGGTACTGCTGAATCACCTGGAGTGATGCTGGTATCATCAGCAGGATCACCAGTCATAGGTGTTATTGATGGGAAGTTTGAAAGTGGATATCTCGTTACGGTCACTGTAGGTGCAGAGAAATTGAAAGGTGTACTTTATCAGGCTCCACAAAGCAATGCATTTCAAACTCCCCAACTTCATAATACTGTCTCTAATGTCAATAATGGTTCTGCATCATCTGGGGTACAACGTCGCCGTCGCCGGAAGAAGTCTGAGATTAAAAGGAGGGATCCTGCTCATCCAAAGCCTAACAGAAGTGGCTATAACTTCTTTTTTCAAGAGCAGCATGGCAGACTTAAACCACTGCACCAAGGGAAAGACAGAGACATTAGTAGGATGATAGGTGAACTGTGGACCAAACTGAATGAATCTGAAAAAGCGGTGTACCAAGAGCAAGCTGTTAAAGATAAAGAGAGATATAGGGTTGAAATGGAGAGTTACCAGGAGAGACTGAAGAGTGGCGGTCAAGTTATCAGTGATGCAGTGCCACTGCAACAGCGCCATCCGGACCAAGATACAGATATGGTTGATGCGCATGCAAAGATTGATGAAACTGAGGAAGACTCTCCTGTGACTCCAGAAGACATGGAGACTAGTTCGGGTGGAAGCGATTATGAAGAGGATCAAGCTCCTGAAAAGGATGTAGAAATGGATACTTGCCCTTTAGAAGCTAGTGTTCAAACGAGCAATGCCATTGCAGAGAATTTAGCAGAGGAAGGCATTGAGATGTTGAAGAAGGATGAGAGCTCTGTTGATGAAAAGGTTGAGAAGAATGATGAGACCACAACCTCTCTAGCAGTACTCTAG 1362 0.4398 MSSPSFMSRTPLPMKDGAPSYYLYPAPEATYEDVVVDPNLFMNSLEKLHASMRTKFMIPIIGGRELDLHKLFVEVTSRGGIEKIIRERKWKEVTAVFNFPSTATNASFVLRKYYSSLLHHYEQIYYFKARGWTPMSVDSSQSPSTSSMSVQRTPPLRSSSGIESSMVQQSRVGTAESPGVMLVSSAGSPVIGVIDGKFESGYLVTVTVGAEKLKGVLYQAPQSNAFQTPQLHNTVSNVNNGSASSGVQRRRRRKKSEIKRRDPAHPKPNRSGYNFFFQEQHGRLKPLHQGKDRDISRMIGELWTKLNESEKAVYQEQAVKDKERYRVEMESYQERLKSGGQVISDAVPLQQRHPDQDTDMVDAHAKIDETEEDSPVTPEDMETSSGGSDYEEDQAPEKDVEMDTCPLEASVQTSNAIAENLAEEGIEMLKKDESSVDEKVEKNDETTTSLAVL* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01699 453 Gene3D High mobility group box domain 250 345 IPR036910 -
Pte10g01699 453 SMART bright_3 36 127 IPR001606 GO:0003677
Pte10g01699 453 MobiDBLite consensus disorder prediction 232 274 - -
Pte10g01699 453 FunFam High mobility group B protein 15 248 344 - -
Pte10g01699 453 MobiDBLite consensus disorder prediction 424 453 - -
Pte10g01699 453 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 11 383 - -
Pte10g01699 453 SMART ARID_2 32 122 - -
Pte10g01699 453 Coils Coil 315 335 - -
Pte10g01699 453 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 266 333 IPR009071 -
Pte10g01699 453 MobiDBLite consensus disorder prediction 424 445 - -
Pte10g01699 453 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Pte10g01699 453 SUPERFAMILY ARID-like 33 132 IPR036431 GO:0003677
Pte10g01699 453 FunFam High mobility group B protein 15 29 143 - -
Pte10g01699 453 SUPERFAMILY HMG-box 254 339 IPR036910 -
Pte10g01699 453 MobiDBLite consensus disorder prediction 232 246 - -
Pte10g01699 453 MobiDBLite consensus disorder prediction 138 170 - -
Pte10g01699 453 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Pte10g01699 453 SMART hmgende2 265 334 IPR009071 -
Pte10g01699 453 CDD HMG-box_AtHMGB9-like 266 332 - -
Pte10g01699 453 Pfam ARID/BRIGHT DNA binding domain 40 122 IPR001606 GO:0003677
Pte10g01699 453 Gene3D - 31 137 IPR036431 GO:0003677
Pte10g01699 453 MobiDBLite consensus disorder prediction 367 401 - -
Pte10g01699 453 Pfam HMG (high mobility group) box 266 332 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01699 Pte-Chr10 35404728 35410993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01699 1 367 ARID Transcription Factor Family AT1G04880 60.743 4.40e-139 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Pte10g01699 ARID 9.1e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01699 - - qsu:112029848 528.094