LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte10g01678	ATGGCTCCGAAGCAGAGAACTCCAAAAGTCAGCAGAAACCCTGATCTGATTAGAGGGGTTGGTAAGTATTCAAGGTCTAAGATGTATCACAAGCGGGGTCTCTGGGCAATCAAGGCGAAGAACGGTGGCGTTTTTCCTCACCACGAAGCTAAGCCTAAGGCTGCTCCTCCAGCTGAGAAGCCACCGAAGTTCTACCCAGCCGAGGATGTCAAGAAACCACTGGTCAACAAACGCAAGCACAAACCAACCAAGCTCAGGGAAAGCATCACCCCCGGTACTGTGCTTATCATTCTTGCTGGAAGGTTCATGGGGAAGAGAGTGGTGTTTCTCAAGCAGCTCCCATCTGGGTTGCTTATGGTTACTGGCCCCTTCAAGATCAATGGTGTTCCCCTGAGACGCGTGAATCAATCTTATGTCATTGCTACTTCCACAAAAGTTGATATCTCGGGTGTCAGTTTGGAGAAGTTCGACGACAAGTACTTTTCAAAGGAAGTACAGAAGAAGAAAAAGAAGGGAGAAGGAGAGTTCTTTGAAGGAGATAAAGAGGATAAAAAAACGCTCCCACAGGAGAAAAAGGATGACCAAAAATCTGTTGACACGGCATTGCTAAAATCCATTGAGGGTGTGCCAGATTTGAAGGCTTACCTTGGGGCTAGGTTCTCTCTGAAGTCTGGCATGAAGCCTCACGAGTTAGTCTTCTAG	702	0.4744	MAPKQRTPKVSRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPHHEAKPKAAPPAEKPPKFYPAEDVKKPLVNKRKHKPTKLRESITPGTVLIILAGRFMGKRVVFLKQLPSGLLMVTGPFKINGVPLRRVNQSYVIATSTKVDISGVSLEKFDDKYFSKEVQKKKKKGEGEFFEGDKEDKKTLPQEKKDDQKSVDTALLKSIEGVPDLKAYLGARFSLKSGMKPHELVF*	234

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte10g01678	233	CDD	KOW_RPL6	81	233	IPR041997	-
	Pte10g01678	233	FunFam	60S ribosomal protein L6	87	171	-	-
	Pte10g01678	233	Pfam	Ribosomal protein L6e	126	233	IPR000915	GO:0003735\|GO:0005840\|GO:0006412
	Pte10g01678	233	MobiDBLite	consensus disorder prediction	176	197	-	-
	Pte10g01678	233	Gene3D	-	87	171	IPR014722	-
	Pte10g01678	233	PANTHER	60S RIBOSOMAL PROTEIN L6	3	233	IPR000915	GO:0003735\|GO:0005840\|GO:0006412
	Pte10g01678	233	MobiDBLite	consensus disorder prediction	1	22	-	-
	Pte10g01678	233	SUPERFAMILY	Translation proteins SH3-like domain	86	176	IPR008991	-
	Pte10g01678	233	ProSitePatterns	Ribosomal protein L6e signature.	127	145	IPR000915	GO:0003735\|GO:0005840\|GO:0006412
	Pte10g01678	233	MobiDBLite	consensus disorder prediction	46	66	-	-
	Pte10g01678	233	Pfam	Ribosomal protein L6, N-terminal domain	3	61	IPR005568	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte10g01678	Pte-Chr10	35167392	35169159	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte10g01678	1	234	Cytoplasmic Ribosomal Protein Gene Family	AT1G74050	82.051	2.78e-125	352

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte10g01678	K02934		-	zju:107408703	389.423