Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01673 ATGGGTGGAGGACTATGGCAGATGGTGATGCCATCTCCATATTTGGAAGCAGCCATAATTGGGTTGATCACAATTCTATCCAATTGTGCTGATGGCCTTGTAGATGCTGTCATGGGCTCGACTGCAATTACCATTTCCAACAATCACTTCACCCACCACAATGAGGTGATGCTGCTAGGCCAGAGTGATTCTTACACAAGAGACAAGATGATGCAAGTAACGATTGCTTACAACCATTTTGGAGAGGGACTTATCCAGAGAATGCCTAGGTGCAGACACGGGTATTTCCATGTGGTGAACAATGACTACACTCACTGGGAGATGTACGCCGTTGGTGGAAGTGCAGAACCAACTATCAATAGCCAGGGCAACAGGTATGCTGCCCCAACTAATCCATTTGCTAAAGAGGTGACAAAAAGGGTGGAAACAGCTGAAAGGGAGTGGAAAGGTTGGAATTGGAGATCAGAAGGAGATATACTGCTCAATGGTGCCTACTTTACTCCATCAGGACCAGGAGTTTCATCCAGCTATGCCAGGGCCTTAAGTTTAGGAGCTAAGTCATCTTCTATGGTTGGGGCAATGACTTCTAATGCTGGTGCTCTCGGCTGTCGCAGAGGCCACCAATGCTAG 630 0.473 MGGGLWQMVMPSPYLEAAIIGLITILSNCADGLVDAVMGSTAITISNNHFTHHNEVMLLGQSDSYTRDKMMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAVGGSAEPTINSQGNRYAAPTNPFAKEVTKRVETAEREWKGWNWRSEGDILLNGAYFTPSGPGVSSSYARALSLGAKSSSMVGAMTSNAGALGCRRGHQC* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01673 209 PANTHER PECTATE LYASE 18-RELATED 26 207 IPR045032 GO:0030570
Pte10g01673 209 SMART amb_all 2 132 IPR002022 -
Pte10g01673 209 SUPERFAMILY Pectin lyase-like 26 209 IPR011050 -
Pte10g01673 209 Pfam Pectate lyase 30 124 IPR002022 -
Pte10g01673 209 Gene3D - 23 202 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01673 Pte-Chr10 35110816 35112820 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01673 26 210 Polysaccharide Lyase AT4G13710 83.243 2.60e-114 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01673 K01728 - jre:108995893 357.066