Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01643 ATGGCTTCTCGGAGTGGATGGTCAAAGATCAGAGAACACTATGGTAGTGGCATGAGCTTCTTTCGTATAATTATGCCCTATAATCTAAAAGAAGGGAAGCTTAGGCTCCCAGAGAAGTTCGTATGCAGATATGGAAAATGTCTGCCACACCCTATTGTGCTTCGTCTTCCCAATGGAACAATGTGGAAAGTGAAGTTGACAACATGCAATGATGCTATTTGGTTAAAAGAAGGGTGGAGAGAATTTACAGAGTACCTATCCCTGGATTTGGGCCATTTTCTGTTGTTCAAATATGAGGAGAATTCTCATTTTCATGTTATGGTTTATGATAAGAGTACCACCGAAATCGACTACCCTTCCAATTTTGGCAGCAATGGTGATACTGTCAATTTGACTCATAAGTCAAAATATCAAAACATTGACATTGATGAGAGTGATGATGATTCTGTTGTGTTCTTGGAGGAAGAATCTGTGAAATCCCTGAAAGAAAACCAAACTATGGAATCCAAGCGCCATAAGAAGCTGAAGACACTGACCAAATGGAAAAAGGAGAGACTTGTACAAAGAGTTGGTAAAGCTTTCAAAACTAAGCATCCTTACTTCATGGTTCCTGTACAACCATCATATATTTCCAAAAATTTTACACTGCATATACCATGGAAATATGTGGAGGGACATTTTGATTTTCTGCAAAATCATGGAGGTCTCATTTTTGAGTCTCCTGATGGGAGAGCCAGCTGGCCAGTCAAGTGCTATATCTGGAAATTAAAATCTAAACCACGACTACATATAAAATGGAAGGAATTCGCTGTAGACAATCATTTAGAAGTAGGGGACGTCTGCATCTTTGTTCTTGTGGAAAGAAGAAATAGAACATACCAAGTTATCATCAAACGGGCCAGCCATGATGATGATAACTGCTCCTTGTCTCCAGCGTATAGTTGTGAAGTTGAAAATAATCCAGGGAGTCATAAAAGAAGCTTGGATGTTGACACTGATCAATTTGATAAAGATTGTTGTCATGGTGATCTATTTGCTAGTGGAAATACTTGCAGTCCTTCAAAGAGGACTAAAGTTAAGAAAACTGAGGCAATGCTAGGAGAAGAGTTAAAATCTTTCAGTTCTGAAGACAGATACATCACTCGTAGTCATGCCCTTTTAGAGACATTTACAGAACTTGTAGCTGCGCAGAAGTTCATGTCGAAGATAGAACATCCGTATTTCATGGTCTCAATGCGGGTGACTCATCTGAAAATTTCATCGACTCTGAGAGTTCCAAAAGAATTTCTGAAGACAAATGATAAACAAAACGTGAGGCTTGAAGTTGGGAAGAAATCGTGGAATCTTATGCTAGTCAATGAGAGAAAATCAGTTTTTAAATTTTCTGGAGGCTGGAGTGCATTTGTCAAGGACAACAATCTACAAGTTGGTGACATTTGTGTGTTTGTGCTGATGGACGGACGTGAGAGAAGACTGAACTTGAAAGTCGCCATATTCAGAAGAACTGTCCAAGTGCTTGCAGCATAA 1527 0.3923 MASRSGWSKIREHYGSGMSFFRIIMPYNLKEGKLRLPEKFVCRYGKCLPHPIVLRLPNGTMWKVKLTTCNDAIWLKEGWREFTEYLSLDLGHFLLFKYEENSHFHVMVYDKSTTEIDYPSNFGSNGDTVNLTHKSKYQNIDIDESDDDSVVFLEEESVKSLKENQTMESKRHKKLKTLTKWKKERLVQRVGKAFKTKHPYFMVPVQPSYISKNFTLHIPWKYVEGHFDFLQNHGGLIFESPDGRASWPVKCYIWKLKSKPRLHIKWKEFAVDNHLEVGDVCIFVLVERRNRTYQVIIKRASHDDDNCSLSPAYSCEVENNPGSHKRSLDVDTDQFDKDCCHGDLFASGNTCSPSKRTKVKKTEAMLGEELKSFSSEDRYITRSHALLETFTELVAAQKFMSKIEHPYFMVSMRVTHLKISSTLRVPKEFLKTNDKQNVRLEVGKKSWNLMLVNERKSVFKFSGGWSAFVKDNNLQVGDICVFVLMDGRERRLNLKVAIFRRTVQVLAA* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01643 508 SUPERFAMILY DNA-binding pseudobarrel domain 402 501 IPR015300 -
Pte10g01643 508 SMART B3_2 201 301 IPR003340 GO:0003677
Pte10g01643 508 SMART B3_2 408 502 IPR003340 GO:0003677
Pte10g01643 508 SMART B3_2 20 112 IPR003340 GO:0003677
Pte10g01643 508 CDD B3_DNA 199 299 IPR003340 GO:0003677
Pte10g01643 508 Gene3D - 15 113 IPR015300 -
Pte10g01643 508 ProSiteProfiles B3 DNA-binding domain profile. 19 112 IPR003340 GO:0003677
Pte10g01643 508 SUPERFAMILY DNA-binding pseudobarrel domain 196 301 IPR015300 -
Pte10g01643 508 PANTHER B3 DOMAIN-CONTAINING 405 502 - -
Pte10g01643 508 CDD B3_DNA 406 500 IPR003340 GO:0003677
Pte10g01643 508 SUPERFAMILY DNA-binding pseudobarrel domain 18 112 IPR015300 -
Pte10g01643 508 ProSiteProfiles B3 DNA-binding domain profile. 201 301 IPR003340 GO:0003677
Pte10g01643 508 CDD B3_DNA 19 110 IPR003340 GO:0003677
Pte10g01643 508 Gene3D - 177 302 IPR015300 -
Pte10g01643 508 Gene3D - 388 503 IPR015300 -
Pte10g01643 508 ProSiteProfiles B3 DNA-binding domain profile. 408 502 IPR003340 GO:0003677
Pte10g01643 508 Pfam B3 DNA binding domain 24 111 IPR003340 GO:0003677
Pte10g01643 508 Pfam B3 DNA binding domain 420 501 IPR003340 GO:0003677
Pte10g01643 508 Pfam B3 DNA binding domain 202 300 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01643 Pte-Chr10 34858529 34861369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01643 20 143 B3 DNA Binding Superfamily AT4G01580 35.556 1.51e-23 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pte10g01643 B3 6.2e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01643 - - rcu:8280159 222.246