Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01642 ATGGCTGGTCATATGGTTTGGGGTCCAATGGAAGAAGAGGGTTGGAGGAAAGGGCCTTGGACTGCCGAGGAAGACAGACAACTTATTGAGTATGTCAATCTCCACGGTGAAGGTAGATGGAATTCTGTGGCAAGGCTTGCAGGTCTGAGAAGGAATGGAAAGAGTTGCAGATTGAGATGGGTGAATTACTTGAGGCCAGACCTCAAGAGAGGCCAGATAACCCCACAAGAAGAGAGAATGATTTTAGAACTGCATGCTAAGTGGGGAAACAGGTGGTCGACCATTGCAAGAAGCTTGCCGGGAAGAACAGACAATGAGATTAAGAATTATTGGAGGACCCATTTCAAGAAAAAGGTTAAGGGTCCATATGATGCTGTTGAAAAAGCCAAACATCGCCTTTTAAGGAGGCAACAATTTCTCCTGCAGCAGCAGCAGCATGAACAACAGCAACCTCAGCAAATTCAAGTTAACCAAATGGACATGAGGGGGATCGATGCCTTGCTTGATGACAACTACCACACAGCACCTTGTTTGTCCCGACCGAGGCAAGACATGCCCACACTTTATCCCAGCAGTACTTCGACTGAGGAGCAAGGGTACATTTTCTCCATGCTTAACGGGAATACATCTATGCCGAAGAACCTGAATGAGGAGATTAATATTTGGGATGGACTTTGGAACTTGGAAGATATCCATAGTAGTTTCAGTGGCGCTTGCGCAACAAGCAAAGCTAGTATGCACAATCTAGTCGTCCCTTTTTGCTAG 765 0.4614 MAGHMVWGPMEEEGWRKGPWTAEEDRQLIEYVNLHGEGRWNSVARLAGLRRNGKSCRLRWVNYLRPDLKRGQITPQEERMILELHAKWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKVKGPYDAVEKAKHRLLRRQQFLLQQQQHEQQQPQQIQVNQMDMRGIDALLDDNYHTAPCLSRPRQDMPTLYPSSTSTEEQGYIFSMLNGNTSMPKNLNEEINIWDGLWNLEDIHSSFSGACATSKASMHNLVVPFC* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01642 254 CDD SANT 74 115 IPR001005 -
Pte10g01642 254 FunFam MYB-related transcription factor 73 119 - -
Pte10g01642 254 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Pte10g01642 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Pte10g01642 254 Pfam Myb-like DNA-binding domain 70 114 IPR001005 -
Pte10g01642 254 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Pte10g01642 254 CDD SANT 19 64 IPR001005 -
Pte10g01642 254 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 11 180 IPR044676 GO:0003700|GO:0006355|GO:0043565
Pte10g01642 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 64 IPR017930 -
Pte10g01642 254 SMART sant 16 66 IPR001005 -
Pte10g01642 254 SMART sant 69 117 IPR001005 -
Pte10g01642 254 FunFam Myb transcription factor 17 69 - -
Pte10g01642 254 Gene3D - 17 69 - -
Pte10g01642 254 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
Pte10g01642 254 Gene3D - 74 119 - -
Pte10g01642 254 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01642 Pte-Chr10 34856801 34857959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01642 12 255 MYB Transcription Factor Family AT3G24310 59.846 2.09e-91 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte10g01642 Myb_DNA-binding 8.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01642 K09422 - tcc:18603343 342.813