Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01634 TTTGGGAATCTGCCTTATAGTGTTGACAGTGCACAACTTGCTAGGATAATTCAGGAATACAGAAGTCCAGAGCTCATTGAGGTTCTCTACGACAAACAAACAGAAAAAAGGCGAGGTTTTGCGTTCGTAACCATGAGTACTATTGAAGACTAAAATGCAGTTATAGAAAATCTTGATGGAACTGTAAGAACCCCTCTTCCCTCACTTTCTCCGGACTTTTTAGACAAGCCTAGACCAAAAATACCTTTATATCCTGAAATTGAGCATAAACTTTTTGTGGAAAACTTATCATGTACAGTAACTTCTGACATTCTGAAAATTGCTTTTGAAGAATATGGGAATGTAGTTGGAGCTAGGGTTCTACATGGTGGGGAGACAGGAAAATCTCGAGGTTATGGTTTCTTGTGTTACGCAACCAGACAAGAAATGGATGTTGCTCTTGAATCTCTCAATGGAATGGAATTG 465 0.3892 FGNLPYSVDSAQLARIIQEYRSPELIEVLYDKQTEKRRGFAFVTMSTIEDXNAVIENLDGTVRTPLPSLSPDFLDKPRPKIPLYPEIEHKLFVENLSCTVTSDILKIAFEEYGNVVGARVLHGGETGKSRGYGFLCYATRQEMDVALESLNGMEL 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01634 155 SMART rrm1_1 2 72 IPR000504 GO:0003723
Pte10g01634 155 SMART rrm1_1 90 155 IPR000504 GO:0003723
Pte10g01634 155 SUPERFAMILY RNA-binding domain, RBD 2 154 IPR035979 GO:0003676
Pte10g01634 155 Gene3D - 78 155 IPR012677 -
Pte10g01634 155 Gene3D - 1 63 IPR012677 -
Pte10g01634 155 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 61 IPR000504 GO:0003723
Pte10g01634 155 PANTHER OS02G0815200 PROTEIN 2 155 - -
Pte10g01634 155 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 155 IPR000504 GO:0003723
Pte10g01634 155 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2 61 IPR000504 GO:0003723
Pte10g01634 155 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 155 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01634 Pte-Chr10 34796989 34799502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01634 3 155 Eukaryotic Initiation Factors Gene Family AT4G34110 29.412 1.39e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01634 - - csav:115723113 218.394