Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pte10g01624 | ATGGATTCTGATCAAGGAAAGCTTTTCATTGGTGGGATTTCATGGGATACCACTGAGGACACACTCAAGAACTATTTTGGTGCTTATGGTGATGTTTTGCAGACTGCTGTGATGAGAGATAAGACCACTGGGAAACCCAGAGGTTTCGGTTTCGTGGTTTTTGCAGATCCTTCTGTCCTTGATACCGTCCTTCAAGAGAAACATGTTATCGATGGCAGAACGGTGGATGCCAAGAGAGCTTTATCTAGAGAAGAACAACAAACCACAGGCACTGCTAGAGGTGGAAACCCCAATAGAAATGCAGGAAGTGGTGGAAATATAAGGACCAAAAAGATTTTTGTTGGAGGCCTTCCTCCTACATTGACTGAAGAAAAATTTCGTCAATATTTTGAAGCCTATGGTCTTGTTACTGATGTGGTTGTTATGTATGACCAGAATACAGGCAGGCCACGTGGATTTGGATTTATTTCTTTTGACAGTGAAGATGCAGTTGACAGGGTTTTGCACAAGACATTTCATGATATGCATGGTAAGCAAGTAGAAGTAAAACGTGCACTTCCTAAAGATGCTAATCCTGGTGCAGGTGGCCAAATGGGTAGAAGTGGAGGAGGTGGTTATCAGGGATATGGAGCTTCTAGTGGGAACTCGAATGCTTATGATGGTCGTTTGGATTCTAATAGATACATGCAGCCTCAAGGAACTGGAGGTGGGTTCCCACCTTACGCTTCTGCTGGCTATAATACTCCTGGATATGGCTATGGTCCTGCCAATAATGGGATGGGATATGGTGGTTATGGAAACTATGGTGGTTCTGGCACTGGGTATGGTGGACCTGCAGGTGCAACATATGGAAATCCTAACGTCCCAAATACTGGTTATGCCAATCCATCAGGTGCTGCAAGAAGTTCATGGAATGCTCCATCACCTGCTGGTTATGGTTCTATTGGTTATGGGAATCCTGCTCCATGGGGTGGTCACAGTGGTGGTGCAGCTGGCTCTGGACCTGCAGGTCAATCTCCCAGTGGAGCTGCTGGATATGGAAATCAGAGTTATGGGTATGGAGGGTATGGTGGATATGGTGGTGGTGACAGTAGTTATGGAAATCAAGGTGTATATGGGGCTGTTGGAGGTCGCTCTGGAGGGATTGTGAGTAATAATGCAACGGGTACTGGAGGGAGTGAGCTACAAGGGACTAGTGGTGGCTATATTGGAAGTGGTTATGGTGATTCAAATGGAAATTCTGGATATGGAAGTGCAGGATGGAGATCTGACCAAGTGCAAGCCTCTGGTTATGGGACTCCTCAGGGAAATGGTTCTCATGGAGCACAAGTCAGTTATGGTGGTGGTTATGGAGGTTCTCAGGGCTGA | 1368 | 0.4605 | MDSDQGKLFIGGISWDTTEDTLKNYFGAYGDVLQTAVMRDKTTGKPRGFGFVVFADPSVLDTVLQEKHVIDGRTVDAKRALSREEQQTTGTARGGNPNRNAGSGGNIRTKKIFVGGLPPTLTEEKFRQYFEAYGLVTDVVVMYDQNTGRPRGFGFISFDSEDAVDRVLHKTFHDMHGKQVEVKRALPKDANPGAGGQMGRSGGGGYQGYGASSGNSNAYDGRLDSNRYMQPQGTGGGFPPYASAGYNTPGYGYGPANNGMGYGGYGNYGGSGTGYGGPAGATYGNPNVPNTGYANPSGAARSSWNAPSPAGYGSIGYGNPAPWGGHSGGAAGSGPAGQSPSGAAGYGNQSYGYGGYGGYGGGDSSYGNQGVYGAVGGRSGGIVSNNATGTGGSELQGTSGGYIGSGYGDSNGNSGYGSAGWRSDQVQASGYGTPQGNGSHGAQVSYGGGYGGSQG* | 456 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pte10g01624 | 455 | MobiDBLite | consensus disorder prediction | 413 | 455 | - | - | |
Pte10g01624 | 455 | MobiDBLite | consensus disorder prediction | 78 | 107 | - | - | |
Pte10g01624 | 455 | CDD | RRM1_hnRNPA_hnRNPD_like | 8 | 78 | - | - | |
Pte10g01624 | 455 | MobiDBLite | consensus disorder prediction | 187 | 209 | - | - | |
Pte10g01624 | 455 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 6 | 88 | IPR000504 | GO:0003723 | |
Pte10g01624 | 455 | SMART | rrm1_1 | 111 | 183 | IPR000504 | GO:0003723 | |
Pte10g01624 | 455 | SMART | rrm1_1 | 7 | 78 | IPR000504 | GO:0003723 | |
Pte10g01624 | 455 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 110 | 187 | IPR000504 | GO:0003723 | |
Pte10g01624 | 455 | SUPERFAMILY | RNA-binding domain, RBD | 3 | 105 | IPR035979 | GO:0003676 | |
Pte10g01624 | 455 | SUPERFAMILY | RNA-binding domain, RBD | 108 | 216 | IPR035979 | GO:0003676 | |
Pte10g01624 | 455 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 | 1 | 452 | - | - | |
Pte10g01624 | 455 | FunFam | Heterogeneous nuclear ribonucleoprotein 1 | 5 | 87 | - | - | |
Pte10g01624 | 455 | Gene3D | - | 1 | 107 | IPR012677 | - | |
Pte10g01624 | 455 | Gene3D | - | 108 | 226 | IPR012677 | - | |
Pte10g01624 | 455 | MobiDBLite | consensus disorder prediction | 413 | 442 | - | - | |
Pte10g01624 | 455 | CDD | RRM2_Hrp1p | 111 | 188 | - | - | |
Pte10g01624 | 455 | FunFam | heterogeneous nuclear ribonucleoprotein 1 | 105 | 222 | - | - | |
Pte10g01624 | 455 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 8 | 73 | IPR000504 | GO:0003723 | |
Pte10g01624 | 455 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 112 | 169 | IPR000504 | GO:0003723 | |
Pte10g01624 | 455 | MobiDBLite | consensus disorder prediction | 84 | 105 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pte10g01624 | Pte-Chr10 | 34738927 | 34744029 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pte10g01624 | 8 | 198 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 22.843 | 7.20e-08 | 53.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pte10g01624 | K14411 | - | qsa:O6P43_021382 | 525.398 |