Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01624 ATGGATTCTGATCAAGGAAAGCTTTTCATTGGTGGGATTTCATGGGATACCACTGAGGACACACTCAAGAACTATTTTGGTGCTTATGGTGATGTTTTGCAGACTGCTGTGATGAGAGATAAGACCACTGGGAAACCCAGAGGTTTCGGTTTCGTGGTTTTTGCAGATCCTTCTGTCCTTGATACCGTCCTTCAAGAGAAACATGTTATCGATGGCAGAACGGTGGATGCCAAGAGAGCTTTATCTAGAGAAGAACAACAAACCACAGGCACTGCTAGAGGTGGAAACCCCAATAGAAATGCAGGAAGTGGTGGAAATATAAGGACCAAAAAGATTTTTGTTGGAGGCCTTCCTCCTACATTGACTGAAGAAAAATTTCGTCAATATTTTGAAGCCTATGGTCTTGTTACTGATGTGGTTGTTATGTATGACCAGAATACAGGCAGGCCACGTGGATTTGGATTTATTTCTTTTGACAGTGAAGATGCAGTTGACAGGGTTTTGCACAAGACATTTCATGATATGCATGGTAAGCAAGTAGAAGTAAAACGTGCACTTCCTAAAGATGCTAATCCTGGTGCAGGTGGCCAAATGGGTAGAAGTGGAGGAGGTGGTTATCAGGGATATGGAGCTTCTAGTGGGAACTCGAATGCTTATGATGGTCGTTTGGATTCTAATAGATACATGCAGCCTCAAGGAACTGGAGGTGGGTTCCCACCTTACGCTTCTGCTGGCTATAATACTCCTGGATATGGCTATGGTCCTGCCAATAATGGGATGGGATATGGTGGTTATGGAAACTATGGTGGTTCTGGCACTGGGTATGGTGGACCTGCAGGTGCAACATATGGAAATCCTAACGTCCCAAATACTGGTTATGCCAATCCATCAGGTGCTGCAAGAAGTTCATGGAATGCTCCATCACCTGCTGGTTATGGTTCTATTGGTTATGGGAATCCTGCTCCATGGGGTGGTCACAGTGGTGGTGCAGCTGGCTCTGGACCTGCAGGTCAATCTCCCAGTGGAGCTGCTGGATATGGAAATCAGAGTTATGGGTATGGAGGGTATGGTGGATATGGTGGTGGTGACAGTAGTTATGGAAATCAAGGTGTATATGGGGCTGTTGGAGGTCGCTCTGGAGGGATTGTGAGTAATAATGCAACGGGTACTGGAGGGAGTGAGCTACAAGGGACTAGTGGTGGCTATATTGGAAGTGGTTATGGTGATTCAAATGGAAATTCTGGATATGGAAGTGCAGGATGGAGATCTGACCAAGTGCAAGCCTCTGGTTATGGGACTCCTCAGGGAAATGGTTCTCATGGAGCACAAGTCAGTTATGGTGGTGGTTATGGAGGTTCTCAGGGCTGA 1368 0.4605 MDSDQGKLFIGGISWDTTEDTLKNYFGAYGDVLQTAVMRDKTTGKPRGFGFVVFADPSVLDTVLQEKHVIDGRTVDAKRALSREEQQTTGTARGGNPNRNAGSGGNIRTKKIFVGGLPPTLTEEKFRQYFEAYGLVTDVVVMYDQNTGRPRGFGFISFDSEDAVDRVLHKTFHDMHGKQVEVKRALPKDANPGAGGQMGRSGGGGYQGYGASSGNSNAYDGRLDSNRYMQPQGTGGGFPPYASAGYNTPGYGYGPANNGMGYGGYGNYGGSGTGYGGPAGATYGNPNVPNTGYANPSGAARSSWNAPSPAGYGSIGYGNPAPWGGHSGGAAGSGPAGQSPSGAAGYGNQSYGYGGYGGYGGGDSSYGNQGVYGAVGGRSGGIVSNNATGTGGSELQGTSGGYIGSGYGDSNGNSGYGSAGWRSDQVQASGYGTPQGNGSHGAQVSYGGGYGGSQG* 456
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01624 455 MobiDBLite consensus disorder prediction 413 455 - -
Pte10g01624 455 MobiDBLite consensus disorder prediction 78 107 - -
Pte10g01624 455 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Pte10g01624 455 MobiDBLite consensus disorder prediction 187 209 - -
Pte10g01624 455 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 88 IPR000504 GO:0003723
Pte10g01624 455 SMART rrm1_1 111 183 IPR000504 GO:0003723
Pte10g01624 455 SMART rrm1_1 7 78 IPR000504 GO:0003723
Pte10g01624 455 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 187 IPR000504 GO:0003723
Pte10g01624 455 SUPERFAMILY RNA-binding domain, RBD 3 105 IPR035979 GO:0003676
Pte10g01624 455 SUPERFAMILY RNA-binding domain, RBD 108 216 IPR035979 GO:0003676
Pte10g01624 455 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 452 - -
Pte10g01624 455 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Pte10g01624 455 Gene3D - 1 107 IPR012677 -
Pte10g01624 455 Gene3D - 108 226 IPR012677 -
Pte10g01624 455 MobiDBLite consensus disorder prediction 413 442 - -
Pte10g01624 455 CDD RRM2_Hrp1p 111 188 - -
Pte10g01624 455 FunFam heterogeneous nuclear ribonucleoprotein 1 105 222 - -
Pte10g01624 455 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 73 IPR000504 GO:0003723
Pte10g01624 455 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 169 IPR000504 GO:0003723
Pte10g01624 455 MobiDBLite consensus disorder prediction 84 105 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pte10g01624 Pte-Chr10 34738927 34744029 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01624 8 198 Eukaryotic Initiation Factors Gene Family AT2G23350 22.843 7.20e-08 53.1
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01624 K14411 - qsa:O6P43_021382 525.398