Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01618 ATGAGAAGTTGGTTCAGCAAGAGAAAATCTGAATTTCATGGTAGAGTTCAAAAGGCGATGAAGTGCTTTTGTTCTGGGGAGCAGCCAAGAATTGAAGATGAAATGGGCTATTCATCTGAGTCCCTCGCAACAAGGGACTATTCCGCAAGTGGCTATTCATCAAAAGCCGGGGAGATAGAAACTAAGGTTGACAACGGAAACATTGAAGAAGCAGAGTCATCTCTTCGTGAAAGTGGTTATTTGAACTATGAGGAAGCAAGAGCTTTGCTGGGAAGGCTTGAGTACCAAAAGGGTAATATAGAAGCTGCTTTGCATGTATTTGGAGGGATAGATATGTGTGCTGTAATTCCCAAGATAAAGGTTTCCCTCTCGAGGAAATGTGAACCAAATAGACGCCATTCGAAAAGTGATGTGTTTCCCCTCATGTCTATGCATGCTGTTAGCTTACTGATTGAAGCTGTTTTGCTCAAGGCAAAATCATTGCAGGCTCTTGGACGGGTCCCGGAAGCTGCTCAGTCATGCAAAAGTATTTTGGATACCGTTGAATCTGCATTACCGGAGGGATTGCCTGAAGATTTTGCCTCTGACTGTAAATTACAGGATACTTTAGCAAAGGCTGTAGAATTGCTTCCAGAGTTATGGAAACTTGGAGGTTACCATCAAGAAGCTGCTGTCTCTTATCGACGAGCCCTCCTTTATAATTGGGATCTTGACATGGAAACTACTGCAAGGATACAGAAAGAATTTGCGGTATATCTTCTGTATAGTGGTTGGGAAGCCAGTCCTCCTACTCTTCGTTTCCAATTGGATGACTCCTTTGTGCCAAGAAACAATGTAGAAGAGGCTATTTTGCTCCTTCTGATTCTACTAAGGAAATTCTTTCTCAAACGAATCGGATGGGATCCTTCCATAATTGAGCATCTTGCCTTTGCATTAACTGTTTGTGGGGAATTAGGGACACTAGCGAAACAAATTGAAGAGTTAGTTCCAGGAATCATTGAGGAAATGGAGAAGTATCAGACTCTTGCTCTATGTTACTATGGAGATGGTCACAGTATGATAGCTCTGAATCTACTGAGAAATTATTTGAGTAAGAAGGAAAAATCAGATTGCAGACATCAATTGCTGCTAGCTTCAAAAATCTGTGGAGAAAATATGAGCTGCGTTGATGAAGGGATCAATTATGCACTCAGATCAATTGATGAATTGCAAGGGAGGTGCTGGCAAATGGTGAGCATGGCATATTGTTTTCTGGGTATTCTGCTGTCATCAAAATCAAGATTAGCTTCTTCTGAATCAGAGAGAACTATGAAGCAATCTGAAGCACTCCATGCATTTGAAACAGCTGAGAGAACTATGACCGAAAAGCATCCGTGTATTGTTTTTCACCTTTGTTTAGAGCATGCTGAGCAACGAAAATTGGATTTTGCTCTTGAGTATGCAAAGGAATTGATCAAGCTTGAAGCTGGCTTAGATATCAAAGCGTATGTCCTCCTGGTGAGAATCTTATCAGCCAAGAAACAGTTTTCTGATGCTGATGCTATACTCAATGCAGCTCTAGACCAAACTGGGAGGTGGGATCAGGGAGAGTTACTGTGCACTAAAGCTAGACTGCGAATTGCACAGAACCAGTTAAAAGATGCTGTGGATACCTATACTCATCTTCTTGCCATTCTTCAAGTTCAAACTAGAAATAGATTTGCGAGAAAGTTTCTAAAGAATAGGGGAAATGATCAAAGAAGATTTGAAATGGAAATATGGCATGACTTGGCTAATATATACACCTCTTTGTCACAATGGCGGGAAGCTGAGGTGTGTCTTTCAAAATCCCAAGCTATAGACCCTTATTCTGCTTCTACATGGCACTTAACAGGCGTACTTTATCAAGCAAAAGGTCAACTCCATCATGCACTCAAATATTTCCAGAAAGCTTTGGACACTGACCCCAACCATGTGTCAAGCTTGATATCTACTGCCTGTGTTCTCAGGCAGCTTGGTAGCCAGACACTTTCAGTTGTAAGAAGTCTTCTCACTGATGCTCTACGACTTGATAGAACAAATTTTGTTGGTTGGTACAATCTGGGGATGGTTTACAGAGCAGAAGGAGGAGTCTCAGTGTCGGATGCTGTTGAATGTTTTGAGGTAGCTGCTTTTCTTGAAGAATCTGCTCCCATAGAACCTTTTAGATAG 2190 0.4155 MRSWFSKRKSEFHGRVQKAMKCFCSGEQPRIEDEMGYSSESLATRDYSASGYSSKAGEIETKVDNGNIEEAESSLRESGYLNYEEARALLGRLEYQKGNIEAALHVFGGIDMCAVIPKIKVSLSRKCEPNRRHSKSDVFPLMSMHAVSLLIEAVLLKAKSLQALGRVPEAAQSCKSILDTVESALPEGLPEDFASDCKLQDTLAKAVELLPELWKLGGYHQEAAVSYRRALLYNWDLDMETTARIQKEFAVYLLYSGWEASPPTLRFQLDDSFVPRNNVEEAILLLLILLRKFFLKRIGWDPSIIEHLAFALTVCGELGTLAKQIEELVPGIIEEMEKYQTLALCYYGDGHSMIALNLLRNYLSKKEKSDCRHQLLLASKICGENMSCVDEGINYALRSIDELQGRCWQMVSMAYCFLGILLSSKSRLASSESERTMKQSEALHAFETAERTMTEKHPCIVFHLCLEHAEQRKLDFALEYAKELIKLEAGLDIKAYVLLVRILSAKKQFSDADAILNAALDQTGRWDQGELLCTKARLRIAQNQLKDAVDTYTHLLAILQVQTRNRFARKFLKNRGNDQRRFEMEIWHDLANIYTSLSQWREAEVCLSKSQAIDPYSASTWHLTGVLYQAKGQLHHALKYFQKALDTDPNHVSSLISTACVLRQLGSQTLSVVRSLLTDALRLDRTNFVGWYNLGMVYRAEGGVSVSDAVECFEVAAFLEESAPIEPFR* 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01618 729 SMART tpr_5 618 651 IPR019734 GO:0005515
Pte10g01618 729 SMART tpr_5 584 617 IPR019734 GO:0005515
Pte10g01618 729 SMART tpr_5 529 562 IPR019734 GO:0005515
Pte10g01618 729 SMART tpr_5 151 184 IPR019734 GO:0005515
Pte10g01618 729 Pfam Tetratricopeptide repeat 619 651 IPR013105 -
Pte10g01618 729 SUPERFAMILY TPR-like 440 558 IPR011990 GO:0005515
Pte10g01618 729 ProSiteProfiles TPR repeat profile. 618 651 IPR019734 GO:0005515
Pte10g01618 729 ProSiteProfiles TPR repeat region circular profile. 618 651 - -
Pte10g01618 729 PANTHER PROTEIN NPG1 20 729 IPR043376 -
Pte10g01618 729 SUPERFAMILY TPR-like 530 702 IPR011990 GO:0005515
Pte10g01618 729 Gene3D Tetratricopeptide repeat domain 14 570 IPR011990 GO:0005515
Pte10g01618 729 Gene3D Tetratricopeptide repeat domain 571 725 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01618 Pte-Chr10 34653735 34658601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01618 20 730 Calmodulin-binding Proteins AT4G28600 54.207 0.0 722
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01618 K21843 - qsu:112015183 1022.69