Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01601 ATGGTGAGAGCTCCTTGCTGTGAAAAGACGGGAGTGAAGAAAGGTCCATGGAGTACTGAAGAAGATCAAATCTTGAAATCTTTTATCGATAAACATGGTCACGGCAACTGGCGTGCGCTTCCAAAGCAAGCTGGTCTACTAAGATGTGGCAAGAGCTGCAGGCTCCGCTGGATTAATTATTTAAGGCCAGATATCAAAAGAGGAAACTTCACAAGAGAAGAAGAGGAAACTATCATTACGCTTCATCAAAAGATGGGAAACAGGTGGTCTGCAATTGCATCGCACTTGGCAGGACGAACTGACAATGAAATAAAAAATGTATGGCATACCCACATAAAGAAGAGGCTCACACAGAACCACCTTAATTTATCAGAGACCAAGAAATACCCGACTAGAAGAGCTAATTCCATTACCCTATCTGATTGCACTTCTACTGCCACCATGCAATCTGAGCTTAGTACCACCAGTTTTGCTGCATGTCGAGGGTTGGACAGTTCAGCATGCACAACATCTCACTCCACTGATTTGTCATCATCGGTTTCAGAAGTCTCCACAAACAACAGAGAAAGTAATAAGAATGATATAGTAAATTTTGATGACATGGAAGAATCTCTAGACATAATGCTGCCTCATGAGATGGATGAGAGTTTCTGGTCAGAGGCACCTCCAGTATGGGATCGACATGAGAATTACACCGTGCCATCATCTGATGATGAAATAATGGAGGTTCAGTTTCCATTCGGCAACAGCAATTATGGTTCAGAAAATGATGATGGAATGAGTTTTTGGTATGACCTATTCGTCACAGCAGGAGACTCGCTCGATTTACTGGGAAAATTTTAA 843 0.4223 MVRAPCCEKTGVKKGPWSTEEDQILKSFIDKHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEETIITLHQKMGNRWSAIASHLAGRTDNEIKNVWHTHIKKRLTQNHLNLSETKKYPTRRANSITLSDCTSTATMQSELSTTSFAACRGLDSSACTTSHSTDLSSSVSEVSTNNRESNKNDIVNFDDMEESLDIMLPHEMDESFWSEAPPVWDRHENYTVPSSDDEIMEVQFPFGNSNYGSENDDGMSFWYDLFVTAGDSLDLLGKF* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01601 280 Gene3D - 68 138 - -
Pte10g01601 280 CDD SANT 69 112 IPR001005 -
Pte10g01601 280 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pte10g01601 280 CDD SANT 16 61 IPR001005 -
Pte10g01601 280 MobiDBLite consensus disorder prediction 170 192 - -
Pte10g01601 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pte10g01601 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pte10g01601 280 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 222 - -
Pte10g01601 280 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pte10g01601 280 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Pte10g01601 280 SMART sant 13 63 IPR001005 -
Pte10g01601 280 SMART sant 66 114 IPR001005 -
Pte10g01601 280 FunFam Transcription factor RAX3 7 67 - -
Pte10g01601 280 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pte10g01601 280 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pte10g01601 280 MobiDBLite consensus disorder prediction 170 193 - -
Pte10g01601 280 Gene3D - 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01601 Pte-Chr10 34520560 34522566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01601 1 269 MYB Transcription Factor Family AT2G31180 47.037 4.23e-73 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte10g01601 Myb_DNA-binding 9.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01601 K09422 - qsa:O6P43_021418 287.73