Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01591 ATGCATGGATTTGCTATATTACTATATATACTTCACTACAAAATCCCTGGCCAACAAGAAAACTACAAATTCGCAAGCTACTCCACATTACAAAATAGACCACACTCCTATATATCCCATCCATGTTGTTGTCACTCATTTAAAATCCACATGTATTCAAGAAATATGGGTGGAGTACCAAACCCCTGGAACGCCCTAGAGTCAACACCTCCTCCTTCTACTTCCTCTTCAACTAGCTGGAACATGACCATGCTATATTATGGGCTTGGGGTTGTGGGGGCGGCTGCCTTAGTGTTAGCAATATACAACCTTATAGTTATAAGATGGTGCACAAGGCAACATATTGTATTACAGGCTTCAAGGATAACCCAGTTTAGTGACGGCATGAGAAGAAGGGGCTTAAAGAATTCAGACAGGAACTTGTTGTCAAGCTTCAAGTACAAGAAAGAAGTGGGGGTTCAGGCGAAAGGACAAGAAGTGCACAAGGTTGAATACGAATGCTCAGTTTGCTTATCAGTTTTTGAAGAAGGTGAGGAGGTGAAGATACTACCTAGATGCAAGCACTCTTTCCATGCAGCTTGTATAGATATGTGGCTGTACTCTCACTTTGACTGCCCACTTTGTCGTCAACCAGTTAAACCTTTGTGTCATCAGTTGCTTCAGGTTAGTGCTAACAGTACGCAGAGCTCTCAATCTCATGAAGTCTTAACAATTCAGTCTGATAATCCAGTTTGA 735 0.4177 MHGFAILLYILHYKIPGQQENYKFASYSTLQNRPHSYISHPCCCHSFKIHMYSRNMGGVPNPWNALESTPPPSTSSSTSWNMTMLYYGLGVVGAAALVLAIYNLIVIRWCTRQHIVLQASRITQFSDGMRRRGLKNSDRNLLSSFKYKKEVGVQAKGQEVHKVEYECSVCLSVFEEGEEVKILPRCKHSFHAACIDMWLYSHFDCPLCRQPVKPLCHQLLQVSANSTQSSQSHEVLTIQSDNPV* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01591 244 ProSiteProfiles Zinc finger RING-type profile. 167 209 IPR001841 -
Pte10g01591 244 PANTHER RING-H2 FINGER PROTEIN ATL16 66 238 IPR044600 GO:0016567|GO:0016740
Pte10g01591 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 215 IPR013083 -
Pte10g01591 244 SUPERFAMILY RING/U-box 154 215 - -
Pte10g01591 244 SMART ring_2 167 208 IPR001841 -
Pte10g01591 244 FunFam RING-H2 finger protein ATL1 121 214 - -
Pte10g01591 244 Pfam Ring finger domain 166 209 IPR001841 -
Pte10g01591 244 CDD RING-H2_EL5-like 166 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01591 Pte-Chr10 34441703 34442982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01591 72 212 C3H Transcription Factor Family AT1G04360 36.667 4.89e-20 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01591 - - qsa:O6P43_022464 172.17