Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01588 ATGGCTTCAAATTCAATCGCTGGTGTTAAAGCAGATAACACTCTCCAATCTATATTATACAACCGTGGCTCTCTTCAGCTGCTCGATCAGAGAAAATTGCCTTTGGAAACAGTCTACTCGGATGTACGGACTGCTACTGATGGCTGGAATGCCATACGTGATATGGTTGTTCGAGGTGCCCCTGCTATTGCCATTGCAGCTGCCCTTTCTCTGGCTGTAGAAGTCTTCAATTTAGAGTCTTTTAATGGATCCCCTGATGATGCTGCTTCCTTTCTTCAACAGAAATTGGAATATCTTGTCTCCAGTCGACCAACAGCAGTGAATCTTTCGGATGCTGCAACAAAACTGAAACAAGTCACACTTGAGGCTGCAGCTACTGCTTCCGAAGCTCAGAATGTTTTCCAGGCATATATAGAAGCTTCTGAGATTATGCTTAAAGATGATGTTGCTTCCAACAAGGCAATTGGTTCTCATGGAGCTAGTTGTCTTCTGCACGGAAAGAACAAGCCAAAGCTTTCTGTTTTGACTCATTGCAACACTGGGAGTTTGGCCACAGCTGGATATGGTACTGCCCTCGGTGTCATACGTGCACTCCATTCTAATGAAGCCCTAGAAAGAGCCTACTGCACAGAAACACGTCCTTTCAATCAAGGATCAAGACTCACTGCATTTGAGTTAGTGCATGAAAACATACCTGCAACTCTCGTAGCAGATTCTGCAGCAGCTGCTCTGATGAAAGCTGGGCGTGTTGATGCTGTCGTTGTTGGAGCAGATCGTGTGGCATCAAACGGTGACACGGCCAACAAAATCGGAACCTATAGCCTGGCGTTGTGTGCCAAGAATCACGGCATACCTTTTTATGTTGCTGCACCACTGACTTCTATTGATTTATCGCTTTCTTCAGGGGAAGAGATCATCATTGAGGAGAGGTCTCCCAAAGAGCTATTGCACTCATGTGGAGGACTGGGAGAACAGGTTGCTGCATCTGGAATTTCTGTCTGGAACCCAGCTTTTGATGTTACACCTGCTAATCTGATAACTGGGATCATTACAGAAAAGGGTATCATAACGAAGGCCAATGCTGGCATCTTTGATATAAAAGATTTTGCCACAAAGACATCTGGCTAG 1128 0.4521 MASNSIAGVKADNTLQSILYNRGSLQLLDQRKLPLETVYSDVRTATDGWNAIRDMVVRGAPAIAIAAALSLAVEVFNLESFNGSPDDAASFLQQKLEYLVSSRPTAVNLSDAATKLKQVTLEAAATASEAQNVFQAYIEASEIMLKDDVASNKAIGSHGASCLLHGKNKPKLSVLTHCNTGSLATAGYGTALGVIRALHSNEALERAYCTETRPFNQGSRLTAFELVHENIPATLVADSAAAALMKAGRVDAVVVGADRVASNGDTANKIGTYSLALCAKNHGIPFYVAAPLTSIDLSLSSGEEIIIEERSPKELLHSCGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGIITKANAGIFDIKDFATKTSG* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01588 375 NCBIfam S-methyl-5-thioribose-1-phosphate isomerase 16 358 IPR005251 -
Pte10g01588 375 FunFam Methylthioribose-1-phosphate isomerase 170 366 - -
Pte10g01588 375 FunFam Methylthioribose-1-phosphate isomerase 13 204 - -
Pte10g01588 375 NCBIfam S-methyl-5-thioribose-1-phosphate isomerase 43 358 IPR011559 GO:0044249
Pte10g01588 375 Gene3D - 13 168 IPR027363 -
Pte10g01588 375 SUPERFAMILY NagB/RpiA/CoA transferase-like 13 359 IPR037171 -
Pte10g01588 375 Gene3D - 169 368 IPR042529 -
Pte10g01588 375 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 11 371 - -
Pte10g01588 375 Hamap Putative methylthioribose-1-phosphate isomerase [mtnA]. 15 367 IPR005251 -
Pte10g01588 375 Pfam Initiation factor 2 subunit family 57 357 IPR000649 GO:0044237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01588 Pte-Chr10 34427486 34431159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01588 54 375 Eukaryotic Initiation Factors Gene Family AT2G05830 78.328 5.97e-174 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01588 K08963 - qsa:O6P43_022504 555.058