Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01572 ATGTATAAAAAAAGATCAATCACAATGAATTTGTTTCCAATGGAGGACAAATTGGACAATACTTGTAACCTGAAGGACATGATCGGCAAATTACAACCACGGAAGAAAGTTACGTCCTTGACTTTATTCCCTCAGGAAACTGCTCTTAGTTCCTCTGTTGCAGAGGAAGATATTTCAAAGATGATTCATCGTCATTCAAGTACTGCTGTGAATAAGTCTGCTTCTGAAGAACAAAAGAGAGCGCAGATGACAATCTTCTATGGTGGGCAAGTGTTTGTATTTGATGATTTTCCTGCTGAGAAAGCACATGTGATGCCATTGAACAGTAAAAGCTGTTCTAGAAACCATGACACTTTTGCTCCTTCAGTGGCTCAAAATCTGCAGTCAATTAATTCAAAGATGGTCCCAACTGCAGTGAACTCCAATCCACCTATTGCTAGAAAAGCTTCCCGATTCATGGAGAAGAGAAAAGATAGAATTGCCTCCAGAGCACCCTATCAAATAAGCAATTTTGTCTCAAGCCATTCTAAATCTACAGTAGCAGAAGGCATGCCATGGCTCTAG 564 0.3989 MYKKRSITMNLFPMEDKLDNTCNLKDMIGKLQPRKKVTSLTLFPQETALSSSVAEEDISKMIHRHSSTAVNKSASEEQKRAQMTIFYGGQVFVFDDFPAEKAHVMPLNSKSCSRNHDTFAPSVAQNLQSINSKMVPTAVNSNPPIARKASRFMEKRKDRIASRAPYQISNFVSSHSKSTVAEGMPWL* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01572 187 ProSiteProfiles Tify domain profile. 76 111 IPR010399 -
Pte10g01572 187 Pfam tify domain 78 103 IPR010399 -
Pte10g01572 187 Pfam Jas motif 144 167 IPR018467 -
Pte10g01572 187 SMART tify_2 76 110 IPR010399 -
Pte10g01572 187 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 51 173 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01572 Pte-Chr10 34274299 34278167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01572 3 187 Tify Gene Family AT1G19180 35.071 1.69e-22 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Pte10g01572 tify 2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01572 K13464 - qsa:O6P43_002641 119.012