Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pte10g01554 | ATGGCTCAATCCGTCTCACCGATTGATATAGTGGACGTTGAAACTTTCTGCTTCACACCCTTGTCCAACAAAGGAACAAACTTGTCGAACGCCATCTCTGTTGAACAATACAGTAATGACAGAGAATTTCAACTCGAGATCATGGCTTCTTCGGGAAAACCAAAAGTTAAGTCTGAAACCTTTGTCGACCTTTCTGTTGAAGACGATTACTTGGGTGGAAACAATGACGACTTACGAGTGTTGTCGTTTATGCCTGTCACGTTTTCAAGGAAACGACCGAAAATGTTTTTCAAGGCGGAAAAAGGTCAGTGTTCAAATTCTAAGAACGAACCGTCCTTTGTATGTGACATTTGCGTCGAACCTAAGACGGAGAATGGATCGTTCAAAATTCAAGGTTGTCCTCATTCGTACTGTACCGACTGCATGATCAAGTATGTGGCGTTTAAGTTACAAGAGAACATCACCAACATTAGATGTCCTGTATCGGAGTGCAATGGATTGTTGGAGCTAGAGTATTGCCGTTCAATTCTCCCTGATGAAGTGTTCCAAAGATGGGGTAATGCTTTGTGTGAGGCTGTGATTCTTGGGTCTCAAAAGTTTTATTGTCCATTTAAGGATTGTTCTGCGCTTATGATTGATGATGGTGGACAAGTCATACAGCAGTCGGAATGCCCAAACTGCAGAAGAATGTTTTGTGCGCAGTGTAAGGTCCCTTGGCATGCGGGGATCAGCTGTGCCAATTTTCAGAAGTTGAGCAAGGATGAGAGGGACAAGGAGGATATCATGTTGAGGAATCTTGCTCAGAACAAGAAGTGGATGAGGTGTCCAAACTGCAGATTCTATGTGGAGAAATCACAGGGTTGCATGTATATAAAATGCAGGTGTGGGCATGCTTTCTGCTACAATTGTGGAGCTAAAAGTCAAAGCAACTCACATTTGTGTCAGAAGTGTAGGCACTAG | 960 | 0.4313 | MAQSVSPIDIVDVETFCFTPLSNKGTNLSNAISVEQYSNDREFQLEIMASSGKPKVKSETFVDLSVEDDYLGGNNDDLRVLSFMPVTFSRKRPKMFFKAEKGQCSNSKNEPSFVCDICVEPKTENGSFKIQGCPHSYCTDCMIKYVAFKLQENITNIRCPVSECNGLLELEYCRSILPDEVFQRWGNALCEAVILGSQKFYCPFKDCSALMIDDGGQVIQQSECPNCRRMFCAQCKVPWHAGISCANFQKLSKDERDKEDIMLRNLAQNKKWMRCPNCRFYVEKSQGCMYIKCRCGHAFCYNCGAKSQSNSHLCQKCRH* | 320 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pte10g01554 | 319 | SUPERFAMILY | RING/U-box | 190 | 250 | - | - | |
| Pte10g01554 | 319 | ProSitePatterns | Zinc finger RING-type signature. | 133 | 142 | IPR017907 | - | |
| Pte10g01554 | 319 | FunFam | RBR-type E3 ubiquitin transferase | 110 | 196 | - | - | |
| Pte10g01554 | 319 | SMART | ibrneu5 | 183 | 245 | IPR002867 | GO:0008270 | |
| Pte10g01554 | 319 | SMART | ibrneu5 | 255 | 317 | IPR002867 | GO:0008270 | |
| Pte10g01554 | 319 | Gene3D | - | 243 | 319 | - | - | |
| Pte10g01554 | 319 | ProSiteProfiles | Zinc finger RING-type profile. | 115 | 163 | IPR001841 | - | |
| Pte10g01554 | 319 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 109 | 194 | IPR013083 | - | |
| Pte10g01554 | 319 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 89 | 317 | IPR031127 | GO:0004842|GO:0016567 | |
| Pte10g01554 | 319 | SUPERFAMILY | RING/U-box | 110 | 192 | - | - | |
| Pte10g01554 | 319 | ProSiteProfiles | Zinc finger RING-type profile. | 275 | 318 | IPR001841 | - | |
| Pte10g01554 | 319 | CDD | BRcat_RBR_unk | 196 | 248 | - | - | |
| Pte10g01554 | 319 | Pfam | IBR domain, a half RING-finger domain | 193 | 245 | IPR002867 | GO:0008270 | |
| Pte10g01554 | 319 | Pfam | IBR domain, a half RING-finger domain | 261 | 310 | IPR002867 | GO:0008270 | |
| Pte10g01554 | 319 | FunFam | RBR-type E3 ubiquitin transferase | 247 | 319 | - | - | |
| Pte10g01554 | 319 | CDD | Rcat_RBR_unk | 271 | 306 | - | - | |
| Pte10g01554 | 319 | SUPERFAMILY | RING/U-box | 256 | 318 | - | - | |
| Pte10g01554 | 319 | ProSiteProfiles | TRIAD supradomain profile. | 111 | 319 | IPR044066 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pte10g01554 | Pte-Chr10 | 34105939 | 34109995 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pte10g01554 | 115 | 305 | C3H Transcription Factor Family | AT2G19610 | 30.198 | 9.31e-22 | 93.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pte10g01554 | K11975 | - | qsa:O6P43_021976 | 450.669 |