Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01552 ATGTTTAATGCTCAAGGTAGTCTAGTTGCTGTTTTTTGCAGTAAAACACGCGACAGTAAGCAGAAGCTAAAGCAGGAAGATTCTGGTCCTCAACCAACATACCCTTTTCCCGAGCTTGCTTCATTCGGCCGACTCGAGGTCCTGGTTCTGAATAAACCAACTAGTGATGAGCTGAGGCGAGTTATTGATTCATCAGACCCAAGTTTAGTCTATCTGCAGGCAAGTGTGTCAGAGGATAATGATGAAGTTGGACCTCTTTCTTTGGATGATGTTGACTTGTCCAACCCTGAGGTCCTATGTGGAGTTTTTGGTACCAAATTGCCTAATACTGTTTATCTAGAAACACCTGAAGGTGAAAAATTGGCTGAGGCACTTCATGAGAAGGGAGTCCCTTATGTTATATACTGGAAAAATGAATTCTCAAAGTATGCTGCTTCTCATTTTCGTCATGCACTATTCTCAGTGGTCCAAAGTTCTTACAGCCACATTTGGGATGCTTTCCAGCTTGCTCATGCTTCTTTTAGGTTATACTGCGTAAGGAACAACAGTGTTTTTCCTTCTAATAGCCAAAAAGTTAGTAACAAGCATGGACCACTATTGCTTGGAGACCCTCCCAATATTGATGTTGTTCTGCCTGAGGTGGAGATGCAGGATGAGGAAAGCTCTCCTGAGTCATTACCTGCTATAAAAATCTATGATGATGATGTAACTATGCGATTTCTTGTCTGTGGAGTTCCATGCACATTGGATGCATGCTTATTGGGATCTTTGGAGGATGGCCTCAATGCTCTCTTAAGCATAGAAATACGTGGGAGTAAGCTTCACAACCGTACAAGTGCTCCTCCACCCCCACTTCAGGCAGGGGCATTTTCTCGTGGAGTGGTGACTATGAGATGTGATATATCTACCTCTAGTTCTGCTCACATATCACTTCTCGTATCTGGCAGTGCAGACACCTGTTTTAACGATCACATTCTGGAGAATCATATTAAAAAGGAGCTCATTGAGAAGAGTCATCTGGTCCATGCATTGCCTCATTGTGAGCAAAGCAACAGTTCTTCTGAGCCTCGGAAGTCTTCCTCAATAGCCTGTGGGGCAAGTGTATTTGAAGTGTGCATGCAAGTTCCTACTTGGGCTTCACAGGTTTTGAGACAGTTGGCACCAGATGCTGTATACCGTAGTCTAGTTGCATTGGGAGTTGCCAGCATCCAAGGATTGGCTGTGGCATCTTTTGATAAAGCTGATGCACAGCGCCTTCTTTTCTTTTGCACAAATCACAGCAAGGAAGTCCAACTGGACGATGTTGTTTTCACTGGGACTCCTTGTTGGTTGGTGCCTCCTCCTCCTAGTCGTAAAAGACCTGAGACATGTCAAAAGACCGGACCTGCCTATGGGAAAGCCTCAATAGCTGCAAATAATGGTAATGCCAGATCAAAATTGAATGTTGCAGCAATGAGGCCTATTCCTCATGCCCACCGTCAAAAGATGTTACCCTTTTCTGGATTTCCTGAGGCTCACAGACATGAAGGAGATCAGGGAAAAGTTAATTTGCCAGTTGCTCCCTCAAAGCATACAACAGGGACTACTTCAGTTACACATAAGAAGTCTTTATCAAATGCACTTCAGGCACAGCAGGCTATTTCTTTAAACCCACTACCGCTAAAGAAACATGGCTGCGAGAGAGCCCCAATACAAGTTTGTTCAGAGGAGGAATTTTTGAAAGACGTAATGCAGTTTCTAATACTTCGTGGACACACTCGGCTCATTCCCCAAGGTGGGCTTGTCGAGTTTCCTGAAGCCATTCTGAATGCTAAGCGCCTTGACCTTTTCAACTTGTACAAAGAGGTTGTATCAAGAGGAGGTTTTCATGTTGGTAATGGCATCAATTGGAAAGGACAAGTTTTTGCCAAGATGCGCAATCACACATCAACAAATAGAATGACAGGTGTGGGTAATACACTCAAAAGACATTACGAGACTTACCTTTTAGAATATGAATTGGCTCATGATGATGTAGATGGAGAGTGCTGCTTGTTGTGCCACAGTAGTGCAGCAGGTGATTGGGTGAATTGTGGAATATGTGGTGAGTGGGCTCACTTTGGCTGTGATAGGCGGCAGGGACTTGGTGCCTTCAAGGACTATGCTAAAACTGATGGGCTGGAGTACATTTGTCCTCATTGTAGCGTTTCAACTTTCAAGAAGAAAACCCAGAAAACTTCCAATGGTTACTAA 2232 0.4395 MFNAQGSLVAVFCSKTRDSKQKLKQEDSGPQPTYPFPELASFGRLEVLVLNKPTSDELRRVIDSSDPSLVYLQASVSEDNDEVGPLSLDDVDLSNPEVLCGVFGTKLPNTVYLETPEGEKLAEALHEKGVPYVIYWKNEFSKYAASHFRHALFSVVQSSYSHIWDAFQLAHASFRLYCVRNNSVFPSNSQKVSNKHGPLLLGDPPNIDVVLPEVEMQDEESSPESLPAIKIYDDDVTMRFLVCGVPCTLDACLLGSLEDGLNALLSIEIRGSKLHNRTSAPPPPLQAGAFSRGVVTMRCDISTSSSAHISLLVSGSADTCFNDHILENHIKKELIEKSHLVHALPHCEQSNSSSEPRKSSSIACGASVFEVCMQVPTWASQVLRQLAPDAVYRSLVALGVASIQGLAVASFDKADAQRLLFFCTNHSKEVQLDDVVFTGTPCWLVPPPPSRKRPETCQKTGPAYGKASIAANNGNARSKLNVAAMRPIPHAHRQKMLPFSGFPEAHRHEGDQGKVNLPVAPSKHTTGTTSVTHKKSLSNALQAQQAISLNPLPLKKHGCERAPIQVCSEEEFLKDVMQFLILRGHTRLIPQGGLVEFPEAILNAKRLDLFNLYKEVVSRGGFHVGNGINWKGQVFAKMRNHTSTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVSTFKKKTQKTSNGY* 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01552 743 ProSiteProfiles ARID domain profile. 566 670 IPR001606 GO:0003677
Pte10g01552 743 MobiDBLite consensus disorder prediction 519 533 - -
Pte10g01552 743 SUPERFAMILY FYVE/PHD zinc finger 662 730 IPR011011 -
Pte10g01552 743 SMART bright_3 567 671 IPR001606 GO:0003677
Pte10g01552 743 Pfam ARID/BRIGHT DNA binding domain 569 666 IPR001606 GO:0003677
Pte10g01552 743 Gene3D - 563 669 IPR036431 GO:0003677
Pte10g01552 743 MobiDBLite consensus disorder prediction 507 533 - -
Pte10g01552 743 CDD PHD_ARID4_like 676 727 - -
Pte10g01552 743 CDD ARID 568 666 - -
Pte10g01552 743 SMART ARID_2 563 666 - -
Pte10g01552 743 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 7 743 IPR042293 -
Pte10g01552 743 SUPERFAMILY ARID-like 567 681 IPR036431 GO:0003677
Pte10g01552 743 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 670 732 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01552 Pte-Chr10 34082773 34089746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01552 1 742 ARID Transcription Factor Family AT3G43240 65.113 0.0 992
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Pte10g01552 ARID 6.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01552 - - pvy:116125860 1135.94