Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01519 ATGGAGGCTAGGATTGGAGGTAAGGGTCACCATGTTTATGGACATGTGGTATCAGAAATGAAGGCTCTCAGTAAAAAAAGTGTGGAGTGGGATTTGAATGATTGGAAATGGGACGGGCATCTTTTTACAGCTAGTCCATTAAATTCTGCTCCAACTGACTGTAAAAGTAGGCAGTTATTTCCACTTGAGCCTGAAATTGGGGCAAGTTCTAATATATCTAACAGTTCATCTTCTGGTTCGGATGACATCGATCGAGGAAGGAGAGAATTAGAGAAGAGGAGAAGAGATTTGACTGTTGAATATGAAGAAATAAATGAAGCTGGTTCTCTTGATTTAAATCTCGGTGAACAAAGATATCTTGATGTTGATGGAGTTGAAAAGTCAGGAAAGAAGTCCAAGATAGTTGCGACTAATTCAAGCCGCGCTGTTTGTCAGGTGGAAGATTGTAAGGCTGATCTTAGCAATGCGAAGGATTATTATAGGCGTCACAAGGTCTGTGATTTGCATTCCAAATCGACTAAGGCACTTGTGGGAAATGTTATGCAGAGGTTCTGTCAGCAGTGCAGCAGGTTTCATGTCCTTCAAGAGTTTGATGAGGGAAAGAGAAGTTGTCGTAGGCGGCTTGCAGGGCATAATAGGAGGAGGAGAAAAACACATCCTGATCCTGCAATAAATGAAGGCTCTGTGAATAATGAAAGGACTAGTAGCTACCTTTTGATAAGTCTATTGCGAATTCTGTCCAACATGCACTCATACAACTCAGAATCAGATCAATCAAAGGACCAGAGTATTCTCTCTCATCTTTTAAGCAATCTTGCAAATCTTGCTGGGCCAATCAATGGAAATAATGTAGCTAATTTATTAGAAAGGTCTCAAGTGTTGCTAAATGGTGGGACATCTAATAATGCTGCAGAAAAGAAGCCTGATGAGAGTCCTAACGGTCCTGTTCCCAATGGACCTTTTGATTCAGCTATTAAGATGGGTGAAAATTATACTCTTCCAAATCCTCTGAATTCTAAAGGGGAAAGAGCGATTGCACCTCTTCATGATACCGCTGAAACATGTGTACCTCCCGGACATGCTGAGGTAGGAAGTAAAAGGTCCATGTCAGTTCTGCAGCTCGCTAATGCACCTTTGTCAAAGGACAACCTTCCTTTCCAGTCAGTTGCAGCCCCAACTACAGTTGGAAGGACGAATGCGTATAACATTGACTTGAATAGTGTGTATGATGATACTCAGGATGTTGTCAAATCCAATGCTCATATTGCTTCGGGGATTGGATCTCTTAGACATCCTTGCTGGTTGCAATCTAGCTTTCAAAATGCAAGCCTGCCCCATACTAGTCGAAATTCAGATTCAACTTCTATGCACTCACCATATGTTTCTAGTGGAGATGCTCCGTGTCGCACAGATCGCATTGTGTTCAAACTGTTTGGGAAGGATCCAAAGGATTTCCCATTTGCACTCAGATCACAGATCCTTAATTGGTTGTCCAACAGTCCAACAGATATTGAGAGTTATATTAGGCCAGGCTGCATAATTCTGACTATGTATATCCGTTTGGAGAAATCTGCATGGAAAAAGCTCAGCAGTGATCTTGGATGGAGCCTGCAAAAACTTCTTAATGCATCAAACGATCCGTTCTGGAGGATCGGATGGATGTATGCAAGGGTGCAAAGCTACTTAGCTTTTGTATACAATGGTCAGGTTTTCTTGGATGTGCCTCTGCCATTGAGGAGCTTGCCATGCTGCACGATATTGAGTGTTAAACCACTTGCTGTTCCTGCATCGAGAAGTACTCGATTTGTAGTAAAAGGTTATAATGTCACCCGATCAAGCACAAGGTTACTTTGTACACTCGAGGGTAATTATCTGGTCCAGGTGAACAGTCCTGACTTGACAGACATTACTGATTCAGCTGCTGTGGACAATGAGCTTCAATGCCTCACATTTTCTTGTTCTATACCAGATGTAACTGGGAGAGGATTTATTGAGGTAGAAGATCATGGTCTCAGCAGCAGTTTTTTCCCATTTATAGTAGCAGAGCAAGAAATTTGTTCAGAAATCTGCACGCTAGAGAAGGTAATTGAAGTGCCTGAGACTTCTTACAATATTGAAGAAGAAAGTAAAGAAATGAATGAGCGGACTCAAGCCCTAGAATTTATTCATGAAATGGGTTGGTTTCTTCGAAGAAACCGTTTGAAGTCCAGATATCCATCTGTGGATTCCAAACAAGATCTCTTCTCTTTCAGAAGGCTTAGATGGCTTCTTGACTTCTCCCTGGACCATGATTGGTGTGCAGTAGTAAAGAAACTTCTCAGTATCCTGTTTGATGGTGTAGTTGATTCTGGAGATCATCCTTCCATTGAGATGGCATTGTTAGACACATATCTTCTCCACAAAGCTGTGAAGAGAAATTGTCGGCCCATGGTGGAACTCCTGTTAAGATTTGTCCCTGTTAGAAGTTCTGAGAAATCAGAGAGTAATAAGAATCAACTAGCTCGGAAAAAGTACATTTTCACACCTGATGTTGCAGGGCCTGTAGGTTTGACTCCTCTTCATATTGCGGCAAGCAGCAGTGGCTCTGAGAATGTTTTGGATGCCTTAACCAGTGATCCTGGATCGGTTGGAATCGAGGCATGGAAGAGTGCTCGTGACAACACAGGTTTGACTCCTAGTGACTATGCATCCCTTCGAGGCCATCACTCATACGTTCAGCTTGTCCAGAGGAAAATAAGCAAGAAGTCTGAACTTGGGCATGTTGCGGTTGACATCACCAGAACCACAGCAGACTTCAACATCAAGCAGAAAGCGATAGATGGGCATAAATCATCAAAAGTTGCCTGCTTTGAGAGTGAGAAGGTGGATATGAAAGCAATATCACGACGTTGTGAATCATGCCGGCAGAAACAGGCTTATCCAATCTCCATGACAACTTCATTATTGTACAGGCCGGCAATGCTTTCCATGGTAGCCATTGCTGCTGTCTGTGTTTGCGTGGCTTTGCTCTTCAAAAGCGCACCTAAAGGTCTTCACAAACCTTTCTCATGGGAAGCTTTGCAATACGGATCAATGTGA 3078 0.4263 MEARIGGKGHHVYGHVVSEMKALSKKSVEWDLNDWKWDGHLFTASPLNSAPTDCKSRQLFPLEPEIGASSNISNSSSSGSDDIDRGRRELEKRRRDLTVEYEEINEAGSLDLNLGEQRYLDVDGVEKSGKKSKIVATNSSRAVCQVEDCKADLSNAKDYYRRHKVCDLHSKSTKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHPDPAINEGSVNNERTSSYLLISLLRILSNMHSYNSESDQSKDQSILSHLLSNLANLAGPINGNNVANLLERSQVLLNGGTSNNAAEKKPDESPNGPVPNGPFDSAIKMGENYTLPNPLNSKGERAIAPLHDTAETCVPPGHAEVGSKRSMSVLQLANAPLSKDNLPFQSVAAPTTVGRTNAYNIDLNSVYDDTQDVVKSNAHIASGIGSLRHPCWLQSSFQNASLPHTSRNSDSTSMHSPYVSSGDAPCRTDRIVFKLFGKDPKDFPFALRSQILNWLSNSPTDIESYIRPGCIILTMYIRLEKSAWKKLSSDLGWSLQKLLNASNDPFWRIGWMYARVQSYLAFVYNGQVFLDVPLPLRSLPCCTILSVKPLAVPASRSTRFVVKGYNVTRSSTRLLCTLEGNYLVQVNSPDLTDITDSAAVDNELQCLTFSCSIPDVTGRGFIEVEDHGLSSSFFPFIVAEQEICSEICTLEKVIEVPETSYNIEEESKEMNERTQALEFIHEMGWFLRRNRLKSRYPSVDSKQDLFSFRRLRWLLDFSLDHDWCAVVKKLLSILFDGVVDSGDHPSIEMALLDTYLLHKAVKRNCRPMVELLLRFVPVRSSEKSESNKNQLARKKYIFTPDVAGPVGLTPLHIAASSSGSENVLDALTSDPGSVGIEAWKSARDNTGLTPSDYASLRGHHSYVQLVQRKISKKSELGHVAVDITRTTADFNIKQKAIDGHKSSKVACFESEKVDMKAISRRCESCRQKQAYPISMTTSLLYRPAMLSMVAIAAVCVCVALLFKSAPKGLHKPFSWEALQYGSM* 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01519 1025 Gene3D - 135 205 IPR036893 GO:0003677|GO:0005634
Pte10g01519 1025 Gene3D - 764 915 IPR036770 -
Pte10g01519 1025 Pfam SBP domain 144 217 IPR004333 GO:0003677
Pte10g01519 1025 ProSiteProfiles Zinc finger SBP-type profile. 141 218 IPR004333 GO:0003677
Pte10g01519 1025 SUPERFAMILY SBT domain 142 223 IPR036893 GO:0003677|GO:0005634
Pte10g01519 1025 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 69 907 IPR044817 GO:0003677
Pte10g01519 1025 Coils Coil 87 107 - -
Pte10g01519 1025 MobiDBLite consensus disorder prediction 208 229 - -
Pte10g01519 1025 FunFam Squamosa promoter-binding-like protein 14 135 205 - -
Pte10g01519 1025 MobiDBLite consensus disorder prediction 298 327 - -
Pte10g01519 1025 SUPERFAMILY Ankyrin repeat 795 907 IPR036770 -
Pte10g01519 1025 MobiDBLite consensus disorder prediction 65 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01519 Pte-Chr10 33476604 33486498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01519 1 285 SBP-box Gene Family AT3G60030 51.525 1.25e-70 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pte10g01519 SBP 1.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01519 - - jre:109001159 1208.74