Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01505 ATGGATGTGAATGGAAGAGGCTGCAGCTCAGGCACCATTGAAAACGATGATGAGATCATGGATCTCAGGCGAGGGCCCTGGACTGTTGATGAGGACCTCATCCTCATGAATTACATTGCCAATCATGGTGAAGGTCGCTGGAATTCCCTTGCTCGATCTGCTGGACTCAAAAGAACAGGCAAAAGCTGCAGATTGAGATGGCTGAATTATCTTCGTCCAGATGTTCGACGTGGAAACATCACACTTGAAGAACAACTCCTGATTCTTGAACTCCATTCTCATTGGGGAAATCGGTGGTCCAAGATCGCTCAGTACTTGCCCGGGAGAACTGACAATGAGATCAAAAACTATTGGAGAACTCGCGTTCAAAAGCACGCCAAGCAGCTCAGGTGTGACGTGAATAGCAAGAAATTCAAGGACACCATGCGTTACCTATGGATGCCGAGACTTGTAGAGCGCATTCAAGCCGCCGCCTCTGCCTCTAACACCGCTGCTGCTACAGACAATAGCATGAGTACCGCCGCTAACAATTGCCATCATTACAACAGCAGCAGCAGCAACATTAACATTGGGCTTCCCAATGGAAACGTGGTCATGCCGACTCCAGCCATGAGCAATGGAGGTTCACAAGTTACGACCCATGAAAGTTACACACCAGAAAATAGTAGCACAGCTGCATCTTCAGACTCCTTTGCTGCTCAAGTGTCACCTGTTTCAGACATAACTGAATATTACAGTATTCCTGCTGCAGTTAATGGCAATAATCAAGATTATTTTTATCAAACTAGTCAAGCAAGCTACTCGGATTCTTTGACTAGTTCATTTGGATTCTTCAGTCATGGATTAGACTTCCAAACCACGAACCACATTCAACAGGAGGAGACTCCATGTTTTCAAGGTGGGGATGTCCAAGAGAATTTATGGAATGTTGAAGATATGTTATTTTTACAACAACAGCTCCATGGCAGCATCTGA 975 0.4554 MDVNGRGCSSGTIENDDEIMDLRRGPWTVDEDLILMNYIANHGEGRWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHSHWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLRCDVNSKKFKDTMRYLWMPRLVERIQAAASASNTAAATDNSMSTAANNCHHYNSSSSNINIGLPNGNVVMPTPAMSNGGSQVTTHESYTPENSSTAASSDSFAAQVSPVSDITEYYSIPAAVNGNNQDYFYQTSQASYSDSLTSSFGFFSHGLDFQTTNHIQQEETPCFQGGDVQENLWNVEDMLFLQQQLHGSI* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01505 324 CDD SANT 97 120 IPR001005 -
Pte10g01505 324 Pfam Myb-like DNA-binding domain 24 71 IPR001005 -
Pte10g01505 324 Pfam Myb-like DNA-binding domain 77 120 IPR001005 -
Pte10g01505 324 ProSiteProfiles Myb-like domain profile. 72 122 IPR001005 -
Pte10g01505 324 SUPERFAMILY Homeodomain-like 21 118 IPR009057 -
Pte10g01505 324 FunFam Myb transcription factor 24 76 - -
Pte10g01505 324 MobiDBLite consensus disorder prediction 199 229 - -
Pte10g01505 324 ProSiteProfiles Myb-like domain profile. 19 71 IPR001005 -
Pte10g01505 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 75 IPR017930 -
Pte10g01505 324 CDD SANT 26 71 IPR001005 -
Pte10g01505 324 Gene3D - 21 77 - -
Pte10g01505 324 FunFam MYB transcription factor 81 144 - -
Pte10g01505 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 126 IPR017930 -
Pte10g01505 324 SMART sant 23 73 IPR001005 -
Pte10g01505 324 SMART sant 76 124 IPR001005 -
Pte10g01505 324 Gene3D - 81 144 - -
Pte10g01505 324 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 21 246 IPR044676 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01505 Pte-Chr10 33345898 33348151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01505 1 316 MYB Transcription Factor Family AT3G06490 52.096 1.00e-89 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte10g01505 Myb_DNA-binding 8.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01505 K09422 - qsa:O6P43_003712 389.808