Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01480 ATGCCTGACCTAGCAAACCTTTCCCTGTCCACTGCCATAGTCACCGACTGCCCAAGCCTTAAGCTCCTGACTGAGCCGGAACCCTTCTCGGATCTGACCCTTTCTTCAACTAGCCCTGTCAAAACCCTACCCAATTGTTACATCTCCAACAACAGCCAAGGATTTCCAGCTCAAAGTTTCTCCAATCGGAGTGGTGTTAAGGTTTTCAGGCGAAATCGTAATTCATTGGACGCAGCAAAGAAAGCTGCTAGCTGTAAGTCATTGGAGGATCATTTGAAAGCTTGGTACGAGAAGAAGATTAGTTCTGGGGTGCAGTCGTCTCGATGCTCTCTGCCATTTCTTGTTGGTTCGCCTCAGATGGATGAATGTCTTGTTTGCCATTGCTTTGTGTATCATGGGGAGGAAATAAAATGCTCTGTACTCGGCTGTCGAGGAGTTTATCACATGAAGTGTGCAAAGGCAACTCTGGGAATCTCAAATCTGGAGAAGTTCAAGTGCTCGCAGCATGCATGCTTTGTTTGCAAAAGGAAGTCATATTGGAGGTGCACACGATGCACGGTGGCATCACATGATAAATGTGCACCATGGCCAGATTTAGTGATTCATCTTGAGGGCCAGCCTGGGAGAGCTGTTTGCTGGCGGCATCATGAGGACTGGAGATTGGATGGCAAGAATCAAGGTTCAACGAATAGCATAGAGGAGGTTTTTGGTCGGTTGCCTATTCCATATACTAACGAGGAGTTCAAGATTGACCCGGCATGGAAAGATGTGGAGAACAAGTTGGAGCCACCCTCATACACACATATCAGGCGGAATATATACCTGGTAAAGAAGAAACGTAGTGATGTGGATATGGGATGCACCAGTTGCAATTCTACGTGCTCAGAGAATTGTGTGTGCAGGGTTCAATGCATAAGCTGCTCAAAAGCATGTCGCTGTTCAGATAATTGCACTAATCGTCCATTTCGCAAGGAGAAAAAGATTAAGGTTGTCAAGACTGAACTTTGTGGATGGGGAGTGGAGGCTGCGGAATCAATAAATAAGGGAGAGTTTGTAATCGAGTACATTGGTGAAGTAATAGATGATGCTTTGTGCGAGAAAAGGCTTTGGGAGATGAAGTACAAAGGTGTACAAAACTTTTATATGTGTGAAATAAGAAAGGACTTCACAATTGACGCAACCTTCAAAGGAAATTCTTCACGATTTTTGAACCATAGTTGTGATCCTAACTGTTTCCTAGAGAAGTGGCAAGTCGAAGGTGAAATACGTGTGGGTGTATTTGCTGCCCGACAAATAGAAGCTGGAGAACCACTAACATATGATTATAGGTTCGTGCAGTTTGGACCTGAGGTGAAATGCCACTGTGGTGCCCGAAATTGTCAAGGGTTTCTTGGGACCAAAAGAAAAATCGGCAAAATTGACCTCTGTTGGGGTTCAAAACGCAAGAGAACTTCAACTGCTTGCGTAGCCATTCTAACTGAATGA 1485 0.4485 MPDLANLSLSTAIVTDCPSLKLLTEPEPFSDLTLSSTSPVKTLPNCYISNNSQGFPAQSFSNRSGVKVFRRNRNSLDAAKKAASCKSLEDHLKAWYEKKISSGVQSSRCSLPFLVGSPQMDECLVCHCFVYHGEEIKCSVLGCRGVYHMKCAKATLGISNLEKFKCSQHACFVCKRKSYWRCTRCTVASHDKCAPWPDLVIHLEGQPGRAVCWRHHEDWRLDGKNQGSTNSIEEVFGRLPIPYTNEEFKIDPAWKDVENKLEPPSYTHIRRNIYLVKKKRSDVDMGCTSCNSTCSENCVCRVQCISCSKACRCSDNCTNRPFRKEKKIKVVKTELCGWGVEAAESINKGEFVIEYIGEVIDDALCEKRLWEMKYKGVQNFYMCEIRKDFTIDATFKGNSSRFLNHSCDPNCFLEKWQVEGEIRVGVFAARQIEAGEPLTYDYRFVQFGPEVKCHCGARNCQGFLGTKRKIGKIDLCWGSKRKRTSTACVAILTE* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01480 494 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 219 IPR013083 -
Pte10g01480 494 CDD SET_ASHR3-like 327 465 - -
Pte10g01480 494 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 494 IPR025787 -
Pte10g01480 494 SMART PostSET_3 449 465 IPR003616 -
Pte10g01480 494 Pfam SET domain 337 442 IPR001214 GO:0005515
Pte10g01480 494 FunFam Histone-lysine N-methyltransferase 243 475 - -
Pte10g01480 494 SMART set_7 326 449 IPR001214 GO:0005515
Pte10g01480 494 Gene3D SET domain 243 476 IPR046341 -
Pte10g01480 494 ProSiteProfiles AWS domain profile. 283 326 IPR006560 GO:0005634|GO:0042054
Pte10g01480 494 ProSiteProfiles SET domain profile. 326 443 IPR001214 GO:0005515
Pte10g01480 494 PANTHER SET DOMAIN PROTEINS 77 485 - -
Pte10g01480 494 ProSiteProfiles Post-SET domain profile. 449 465 IPR003616 -
Pte10g01480 494 SUPERFAMILY SET domain 247 455 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01480 Pte-Chr10 33099229 33104758 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01480 307 464 C2H2 Transcription Factor Family AT2G23740 38.122 5.46e-24 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pte10g01480 SET 1.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01480 - - qsa:O6P43_022233 758.444