Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01446 ATGTCAGGAGAAGAAGCACAAGTCGAAGTAGAGGCTGCACCTGCTCCTGCACCTGCAGCAGTGGTAGAAGATCTGGACATTGAGAAAGCTTTGGAGCTTGTGCTAAGGAAGTCAAATGCATATGGTGGACTAGCACGGGGACTCCACGAGGGTGCCAAGGCCATTGAAAAGCGTACTGCTTTTCTATGTGTTCTTGCAGAGGACTGTGATGAGCAAAATTATGTTAAGTTGGTGAAGGCACTTTGTGCTGAGCACAATATTGATCTGTTTACCGTCCCAAGTGCGAAGACCCTTGGCGAGTGGGCTGGTTTGTGTAAGATTGACTCTGAGGGAAAGGCCAGGAAGGTGGTTGGTTGCTCCTGTGTTGTAGTTAAGGACATCGGGGAGCAGACACCAGCTTCTGATTTCATCAAGAATAGAAAGTCTCAGTAG 432 0.4838 MSGEEAQVEVEAAPAPAPAAVVEDLDIEKALELVLRKSNAYGGLARGLHEGAKAIEKRTAFLCVLAEDCDEQNYVKLVKALCAEHNIDLFTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDIGEQTPASDFIKNRKSQ* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01446 143 FunFam 40S ribosomal protein S12 7 143 - -
Pte10g01446 143 SUPERFAMILY L30e-like 26 140 IPR029064 -
Pte10g01446 143 PANTHER 40S RIBOSOMAL PROTEIN S12 14 140 - -
Pte10g01446 143 Gene3D - 7 143 IPR029064 -
Pte10g01446 143 ProSitePatterns Ribosomal protein S12e signature. 30 48 IPR000530 GO:0003735|GO:0005840|GO:0006412
Pte10g01446 143 PRINTS Ribosomal protein S12E family signature 34 47 IPR000530 GO:0003735|GO:0005840|GO:0006412
Pte10g01446 143 PRINTS Ribosomal protein S12E family signature 89 110 IPR000530 GO:0003735|GO:0005840|GO:0006412
Pte10g01446 143 PRINTS Ribosomal protein S12E family signature 48 64 IPR000530 GO:0003735|GO:0005840|GO:0006412
Pte10g01446 143 PRINTS Ribosomal protein S12E family signature 114 127 IPR000530 GO:0003735|GO:0005840|GO:0006412
Pte10g01446 143 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 30 123 IPR004038 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01446 Pte-Chr10 32486723 32489006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01446 1 138 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 66.667 3.89e-61 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01446 K02951 - jre:109012893 188.348