Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01438 ATGACTATGGAGGACCCAAGGGGTGGTTTTGTGGATGAAAATAGAGCCATCGAAAATTTTCCGGTGGGTATGCGCGTGCTAGCTGTAGATGACGACCCTATTTGTCTCATAGTACTGGAGAATCTGCTCCGAAAATGCCAGTATCATGTTACGACAACAAGCCAGGCAATCAAGGCACTGCAGATGTTGAGGGAGAACCGAAACAAATTTGACCTGGTAATAAGTGATGTCAATATGCCAGACATGGATGGCTTTAAGCTTCTTGAGCAAGTGGGGCTTGAGATGGACCTACCTGTCATTATGTTGTCCGCACACAGTGACACAAACCTTGTAATGAAGGGTGTTACACATGGGGCAGTTGACTATTTGTTAAAACCAGTTAGGATCGAAGAGCTCAAGAATATCTGGCAACATGTAATTCGGAGAAAGAAAGTTGATTCTAGGGACCAGAATAATGCTCCCTCTCAAGAGAAGGCTCAATGTGCCACTGGTGACAGTGCGCGTGGCACCGCCATAGCAAACAGTATTGATCAAAATGGGAAAAGCGGTAAAAGACAGAAAGACCAAAATGAGGATGAGGATGAAGATCCAGCAGAGAGTGGTCCCGAAAGTGATGATCCTTCAACTCAAAAGAAGCCTCGAGTAGTCTGGTCAGTTGATCTCCACAGAAAGTTTGTTGCTGCAGTTAAGCAGTTGGGGCTTGAAAAGGCTGTCCCAAAGAAAATCCTCGATTTAATGAAAGTTGAAGGACTCACAAGGGAAAATGTTGCAAGCCATCTACAGAAATACAGGCTCTATCTCAAACGAATCCACACTGAAGAAACGCAGCAAGCGCATATGATCACTGCACTAGGAGGTAAAGATTCCTCCTACATGCGGATGGCTCCATTAGATGGATTTGGAGATTTTCGTGGTTTATCAGGATCAGGAAGGCTGCCTAGCACCTTTTTGCCTTATACATCTGGTGCAATCTTTGGTAGATTGAACTCTCCTGCTGGACTAAGCTTACATGGAATTCCACCTTCTGGTCTAATTCAACCAGCTCAGTCTCAAAGCTTGAGCAGCTCCATGTACACACATGGAAAGGACCATCCAGCTATGCTGCACCCAGATCAGAGCTCTAGTTTGTTTCAGGGAATTCCCACTTCCTTGGAGATTAACCAGCTGCAACAGAGTACCTGTACTCCAAGCATTAGCCAGTTGAATCCTGTTGATGACTCAAATAGCTTTACAGTTCCTGCACACATCACTGACAATAGAGTCACTGTTGGTTCTTCCAGCAATTCCTTGCCAATTGTTTCTAGCAATGCTTTGATGTTTCAGGGAAACCCCCATCAAGGTCCAACACCATATGGAAATCAAGATTTAAGTGTTTCCTCTAGTTTATTTGATAACGCAAGATGTAATCAAAGCTGGCAGGGCGCTGCTCAGTTGTCAAAGTTTCCATCAACTTCTTCAGCAGATGGCATAAATATTCTTTCCTCAAGTCCTCTCATTGTGAAAAGTCCCATTGATTTTTCTTCAGCAAATGCAGTGTCTATCCCTCTCAAGGATGGCTGTGGTGCTGTGCAATGCCAGGAAGGCTTCATTGGTAATAGCATTCAGTCTAGCAGTTGTATGCAGAAGCAAAGGTGGGAAGACCATAAACGGGATTACCAAAAATTAGATCCTACTTTCAACACAAGGAATTCATTGGTTTCTTCTGCTGGTGCGACAATGAGTTCGATGAAGGAAGATTTACAACAAAATTATGCATTTTGCAGTAAGAGGATTGATGACTCGTCATATGGCCAATTGGATGGAGCTGCTCCATCTGTACAAATAGCTGATATGGGGAAATTTTCCATGGGCATAAAGACAAAGCATTCTGAGCCATACATCTTGGACCAGATGAAGTCACGCCATGTTCAAGACAATTTTGGATCCATTGATGACATAATGAGTGCAATGGTGAAACGGGAACAGATCAGGACAACCTTGATGAGCGGTGAACTTGGGATAGATGCTTACCCTCTTGGATCCTGCATTTGA 2031 0.4387 MTMEDPRGGFVDENRAIENFPVGMRVLAVDDDPICLIVLENLLRKCQYHVTTTSQAIKALQMLRENRNKFDLVISDVNMPDMDGFKLLEQVGLEMDLPVIMLSAHSDTNLVMKGVTHGAVDYLLKPVRIEELKNIWQHVIRRKKVDSRDQNNAPSQEKAQCATGDSARGTAIANSIDQNGKSGKRQKDQNEDEDEDPAESGPESDDPSTQKKPRVVWSVDLHRKFVAAVKQLGLEKAVPKKILDLMKVEGLTRENVASHLQKYRLYLKRIHTEETQQAHMITALGGKDSSYMRMAPLDGFGDFRGLSGSGRLPSTFLPYTSGAIFGRLNSPAGLSLHGIPPSGLIQPAQSQSLSSSMYTHGKDHPAMLHPDQSSSLFQGIPTSLEINQLQQSTCTPSISQLNPVDDSNSFTVPAHITDNRVTVGSSSNSLPIVSSNALMFQGNPHQGPTPYGNQDLSVSSSLFDNARCNQSWQGAAQLSKFPSTSSADGINILSSSPLIVKSPIDFSSANAVSIPLKDGCGAVQCQEGFIGNSIQSSSCMQKQRWEDHKRDYQKLDPTFNTRNSLVSSAGATMSSMKEDLQQNYAFCSKRIDDSSYGQLDGAAPSVQIADMGKFSMGIKTKHSEPYILDQMKSRHVQDNFGSIDDIMSAMVKREQIRTTLMSGELGIDAYPLGSCI* 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01438 676 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Pte10g01438 676 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 209 268 IPR017930 -
Pte10g01438 676 Gene3D - 208 271 - -
Pte10g01438 676 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 379 IPR045279 GO:0009736
Pte10g01438 676 SUPERFAMILY CheY-like 23 147 IPR011006 -
Pte10g01438 676 SMART REC_2 24 136 IPR001789 GO:0000160
Pte10g01438 676 MobiDBLite consensus disorder prediction 152 180 - -
Pte10g01438 676 Gene3D - 23 161 - -
Pte10g01438 676 MobiDBLite consensus disorder prediction 144 212 - -
Pte10g01438 676 NCBIfam myb-like DNA-binding domain, SHAQKYF class 212 265 IPR006447 GO:0003677
Pte10g01438 676 CDD REC_typeB_ARR-like 26 140 - -
Pte10g01438 676 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Pte10g01438 676 PIRSF RR_ARR_type-B 1 676 IPR017053 GO:0003677|GO:0003700|GO:0009736
Pte10g01438 676 Pfam Myb-like DNA-binding domain 214 264 IPR001005 -
Pte10g01438 676 SUPERFAMILY Homeodomain-like 209 269 IPR009057 -
Pte10g01438 676 FunFam Two-component response regulator 208 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01438 Pte-Chr10 32426162 32432087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01438 11 677 Response Regulator Gene Family AT2G25180 38.067 2.10e-122 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Pte10g01438 Response_reg 2.4e-25 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01438 K14491 - qsa:O6P43_022161 786.949