Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pte10g01432 | ATGTCGGGTTGGGACGAAGGAGCCGTTTACTACAGTGACCAAGCACACTCCTGGGACGACGGAGCCGACCGCGGCGATCCAGAATCTGCTGCCACCAACCACTCGATCATCCAGAAATTCAAAGAGTTTATTAGAAACTTTGAGATCGAAAGAAATGTATTCCCTTACCGGGAAAGCCTTGTCCATAACCCTAAGTTCCTTCTTGTCGACATGGAAGACCTCGACTCCTTTGACTCTGACCTACCTTCCAAACTTCGTTCTGCACCGGCAGATTACCTGCCATTGTTTGAGATGGCGGCGGGTCAGGTGTTGGCGAGTTTGAAGACGAAGGTGGCAGGAGATACCGGAGCTATGGAGGAGCCGGTGACTGGAGATGTGCAGATTTTGCTCACTTCAAAGGAGGACCCTGTGTCAATGAGATTGCTTGGGGCTCCATACATATCAAAGCTTGTCAAGATATCGGGAATAGTGATTGCTGCTTCTAGGACCAAGGCAAAAGCAACTTATGTCACTTTAGTATGTAAGAACTGCAAAACATGGAGGCAAGTTCCTTGCCGGCCTGGACTTGGCGGGGCTATGGTACCTAGGTCTTGTGATCATATACCTCAGCCGGGAGATGAACCTTGTCCTCTCGATCCATATCTTGTAGTTCCAGACAAGAGTCAGTACGTCGATCAACAAACCTTGAAACTGCAGGAGAACCCAGAGGATGTTCCGACAGGGGAGCTTCCTAGAAACATGCTTCTCTCCATTGATCGCCATCTTGTTCAAACAATAGTACCAGGAACAAGATTAACCATCATAGGGATATACAGTATCTACCAATCTGCCAATTCTTCTGCCTCTCATAAAGGAGCTGTTGCAGTGAGGCAGCCTTACATAAGGGTTGTGGGGATAGAGGCAGCAAATGAAGCCAATTCTCGAGGCCCAACCGCTTTTACTTCAGATGAGATAGAAGAATTCAAAAAATTTGCTTCTGAGCATGATGTATACAAAAACATATGCTCCAAAATAGCTCCATCTATATTTGGTCATGATGATGTAAAGAAGGCTGTAGCTTGTCTGCTTTTTGGAGGATCAAGAAAGAACTTACCTGACGGTGTAAAGCTAAGAGGTGACGTGAATGTGTTGCTTTTAGGGGACCCATCTACTGCTAAATCACAGTTTCTCAAGTTCGTTGAAAAAACTGCTCCTATTGCTGTTTACACTTCTGGGAAAGGGTCTTCTGCTGCTGGTCTTACGGCTTCTGTTATCCGAGATAATAGCTCTCGTGAGTTCTATCTTGAAGGAGGAGCAATGGTCTTGGCAGATGGAGGAGTTGTCTGCATTGACGAGTTTGACAAAATGAGGCCAGAAGACAGGGTTGCTATTCATGAAGCCATGGAACAACAAACCATATCAATAGCTAAAGCAGGAATAACAACAGTTCTTAACTCAAGAACATCAGTTCTTGCTGCCGCGAACCCTCCATCGGGGCGTTATGATGACCTAAAGACTGCACAAGACAACATTGATTTACAGACCACTATTCTTTCCAGATTTGATCTAATTTTTATTGTGAAAGATATCAGACTTTACAGTCAAGACAAGATAATAGCTAGTCATATCATAAAGGTTCATGCGTCAGCAAATGCAACCATGGGTGAGAGTAAAGTTTCTAAAGAGAACTGGCTAAAAAGGTACATACAGTATTCTCGATCTGAATGTCACCCTCGTTTAACAGAATCAGCTGCCACATTACTGCAGAATACTTATGTCAAAATCAGACAGGACATGAGGCGCCAGGCAAATGAAACTGGAGAAGCCACTGTCATTCCTATCACTGTCAGGCAGTTGGAAGCTATTGTTAGGTTGAGTGAAGCACTTGCAAAGATGAAACTGTCTCACGTTGCTACTGAGGATAATGTGCAAGAAGCGATAAGATTATTTACTGTTTCCACTATGGATGCTGCTAGGTCTGGAATAAATCAACAAATTAATCCTACGCCTGAGATGCGCAATGAAATACTGCAAGCAGAAACTCAGATTAAGAGAAGACTTGGAATTGGCAATCACATGTCAGAGCGAAAACTCATCGACGAGCTCACCAGAATTGGAATGAACGACTCCATTGTGAGAAGAGCTCTTATAGCCATGCACCAGAAAGATGAAATTGAATACAAGCGAGAGAGGCGTCTCATATACCGGAAAGCATAA | 2196 | 0.4426 | MSGWDEGAVYYSDQAHSWDDGADRGDPESAATNHSIIQKFKEFIRNFEIERNVFPYRESLVHNPKFLLVDMEDLDSFDSDLPSKLRSAPADYLPLFEMAAGQVLASLKTKVAGDTGAMEEPVTGDVQILLTSKEDPVSMRLLGAPYISKLVKISGIVIAASRTKAKATYVTLVCKNCKTWRQVPCRPGLGGAMVPRSCDHIPQPGDEPCPLDPYLVVPDKSQYVDQQTLKLQENPEDVPTGELPRNMLLSIDRHLVQTIVPGTRLTIIGIYSIYQSANSSASHKGAVAVRQPYIRVVGIEAANEANSRGPTAFTSDEIEEFKKFASEHDVYKNICSKIAPSIFGHDDVKKAVACLLFGGSRKNLPDGVKLRGDVNVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDNSSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDIRLYSQDKIIASHIIKVHASANATMGESKVSKENWLKRYIQYSRSECHPRLTESAATLLQNTYVKIRQDMRRQANETGEATVIPITVRQLEAIVRLSEALAKMKLSHVATEDNVQEAIRLFTVSTMDAARSGINQQINPTPEMRNEILQAETQIKRRLGIGNHMSERKLIDELTRIGMNDSIVRRALIAMHQKDEIEYKRERRLIYRKA* | 732 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pte10g01432 | 731 | CDD | MCM5 | 333 | 646 | - | - | |
| Pte10g01432 | 731 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 431 | 445 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pte10g01432 | 731 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 459 | 472 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pte10g01432 | 731 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 371 | 386 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pte10g01432 | 731 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 483 | 495 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pte10g01432 | 731 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 510 | 518 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pte10g01432 | 731 | Gene3D | - | 31 | 116 | - | - | |
| Pte10g01432 | 731 | ProSiteProfiles | MCM family domain profile. | 330 | 536 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pte10g01432 | 731 | SMART | mcm | 135 | 648 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Pte10g01432 | 731 | FunFam | DNA helicase | 311 | 661 | - | - | |
| Pte10g01432 | 731 | Pfam | MCM P-loop domain | 318 | 540 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pte10g01432 | 731 | Gene3D | - | 311 | 667 | IPR027417 | - | |
| Pte10g01432 | 731 | Pfam | MCM N-terminal domain | 38 | 115 | IPR027925 | - | |
| Pte10g01432 | 731 | ProSitePatterns | MCM family signature. | 439 | 447 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Pte10g01432 | 731 | Gene3D | - | 139 | 274 | IPR012340 | - | |
| Pte10g01432 | 731 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 33 | 689 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Pte10g01432 | 731 | PRINTS | Mini-chromosome maintenance (MCM) protein 5 signature | 140 | 155 | IPR008048 | GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Pte10g01432 | 731 | PRINTS | Mini-chromosome maintenance (MCM) protein 5 signature | 290 | 302 | IPR008048 | GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Pte10g01432 | 731 | PRINTS | Mini-chromosome maintenance (MCM) protein 5 signature | 565 | 580 | IPR008048 | GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Pte10g01432 | 731 | PRINTS | Mini-chromosome maintenance (MCM) protein 5 signature | 166 | 178 | IPR008048 | GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Pte10g01432 | 731 | PRINTS | Mini-chromosome maintenance (MCM) protein 5 signature | 641 | 658 | IPR008048 | GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Pte10g01432 | 731 | SUPERFAMILY | Nucleic acid-binding proteins | 39 | 296 | IPR012340 | - | |
| Pte10g01432 | 731 | FunFam | DNA helicase | 31 | 119 | - | - | |
| Pte10g01432 | 731 | Gene3D | - | 166 | 224 | - | - | |
| Pte10g01432 | 731 | Pfam | MCM OB domain | 139 | 274 | IPR033762 | - | |
| Pte10g01432 | 731 | FunFam | DNA helicase | 166 | 224 | - | - | |
| Pte10g01432 | 731 | Pfam | MCM AAA-lid domain | 557 | 646 | IPR041562 | - | |
| Pte10g01432 | 731 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 340 | 648 | IPR027417 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pte10g01432 | Pte-Chr10 | 32377768 | 32383089 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pte10g01432 | 1 | 732 | Core DNA Replication Machinery Family | AT2G07690 | 79.456 | 0.0 | 1193 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pte10g01432 | K02209 | - | qsa:O6P43_003024 | 1269.22 |