Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01431 ATGCCGGAGGAAGAAGGCTCACGCATGGACAAATTCAGTACCTCTGATTCTATGTCAGTTGGCTGTACCGATCACGTGAAATCCGTCTCAGGAGAGGTGAAAACTGACAAGGATCCTAGAACGGTTGCCAGAAAGTATCAGCTGGAGTTATGCGAGAAAGCTTTGCGAGAAAATGTAATTGTTTGGTTGGGTACAGGCTGCGGTAAAACGCACATTGCCGTGCTGCTTATGTACGAGATGGGTCACTTGATAAGGAAGCCTAAGAAAAACATTTTTGTTTTTCTTGCTCCTACAGTTGCTCTAGTTCAGCAGCAAGCAAAGGTTATAGAAGACTCACTTGATTTTAAAGTTCAATGTTATTGCGGGAGTTCCAAGAGCTTGAAAAGTCGTCAAGATTGGGACAGCGAGCTTAATGAATATGAGGTTTTTGTTATGACCCCTCAGATATTATTTCACTGCTTATCTCACTGCTACATCAAGATGGACTCAATTGAGCTTTTGATATTTGATGAATGCCACCATGCCCAAGTCAACAGCAACCATCCTTATGCCGAAATTATGAAAGTTTTCTATAAACCCAATGGTGGAAAGCTTCCCCGTATATTTGGCATGACTGCATCTCCAGTTGTAGGAAAAGGTGCTTCTAATCCTACAAACCTTCCCAAAACTATCAATAGTCTTGAACATATACTTGATGCTAAGGTTTATTCAGTTGAAAACAAAGAAGAATTGGATAGTGTTGTGGCAACTCCTGTGCTGGTGATGACCTCCTTGGATTGGAAAATATTTGTGACCATAGTCAGGGCATTATTAGCTTGGTGGCTTCCAGATCCTTCACAAGGGGCAAGCAGTACGCCAACATCTCTTCTGTTTTATCATTTGACTTGTTTTGTGTATGGTGGCAATGAAACTGATCCCTTCTTTATAGACTTCTTAAGGGAACCCATCTTCTCACGGAAGCTTTTATGCCTTATTGGAATTCTTTCCTCTTTTAGATTAGAACCAACTACAAAATGTATTATATTCGTCAATAGAATTGTTACCGCTAGATGCTTATCATACATCCTACAAAAGCTTAAGATCCTGTCGTCATGGAAGAGTGGTTTCCTTGTAGGAATCCACTCTGGAATGAAGAGTATGTCTCGGAAGAGCACGAAAACTGTTCTTGATAAGTTCCGTTCTGGAGAGTCGAATCTATTGGTTGCAACTAAAGTGGGTGAGGAAGGGCTGGACATTCAGACATGTTCGCTTGTGATAAGGTTTGATCTTCCAGAAACAGTTGCCAGCTTCATACAGTCAAGAGGTCGTGCACGTATGCCTCAGTCTCAATACGCGTTTCTGGTGAACAGTGGCAACACCAAGGATATGAACTTAATTGAAAGTTTCAAGAGGAATGAAGAGCAAATTAATTTTGAAGTTGCTATCAGGACATCTGATGAGATGTTGTCAAGTTCTCAGGAAAGAGTATACAAGGTTGATTCATCTGGTGCTACTGTCAGTTCCGGTTATAGCATCTCCTTGCTTCACCAGTACTGTGCGAAACTTCCTCATGATGAGTATTTTGACCCCAAACCCATGTTTTTCTACTTTGATGATTTGGGAGGAACAGTCTGCGGCATAACTTTTCCATGCAATGCTCCGATAAATCAAATTATAAGTGATCCTCAATCATCAATGGAGGCTGCCAAAAAGGATGCTTGTCTGAAAGCAATTGAAGAATTACATAAAATTGGTGCCTTAAATGATTTTCTGTTGCCCGGGAAAGAAGAGACAAACAAACAGGAAGTAGTTATTGATTCTGATATTGACAGATATAAAGAGGGCAGTTCTCGAGGAGAATTATATGAGATGTTAGTTCCTTCCACCCTTCAAAATGCTTGGACAGAGAATGACAGTCCTCTTTTTCTTAACTCTTACTTCATAGAGTTTAAGCCTGAACCAAAGGATAGGGACTATAAAAAGTTTGGTTTATTTATAAAGACATGTCTCCCCTCTGAGGCTGAAAGGATGGAGCTTGACCTTCATTTGGCTCGTGGGAGATCAGTGATGACCAAATTTGTACCATCTGGGCTTGCAGAATTCCATGGCGATCAGATTAAAATGGCTCATCATTTTCAGGAAATGTTCCTAAAGATCATCCTTGACAGATCAGACTTTATTCCCGAATATGTAACTTTGGGGAAAACTGACTCTCTGCAAGCAAGATTATCAACCTTCTATTTGTTGCTTCCTGTTATTCTGAATGAACATGAAAGCAAGATGATGGTAGACTGGGAGATACTAAGAAGATGTCTATCTTCACCTATGTTCAGGCATCCTGCTGCTGCGCATGAGATTTTTATTTCCAACGAGTACATCCAACTTGCCAATGGTCATCGAAGCATGAGAGACGTGGAAAATAGTTTGATATATGCCCCACATAAGAAGGCATTTTACCTTATCACTAATGTGGTTCATGAGAAGAGTGGTCTTAGTCCCTTAAAAGACTCTGCTGCTTTCACCCATGTAGACCACTTCAGAGAAAGGTTCTCCATTGATCTGAAGTATCCTGGCCAACCTCTATTACGTGCTAAACCACTCTTCTCTCTGCACAACTTGCTTCACAACCGAAAGTCAGAGGATAGAGCAGAACTACAAGAGCTTGAAGAATATTTCATTTATTTGCCTCCTGAGCTTTGTGAATTGAAGATAATTGGCTTTTCAAAAGATATTGCTAGTTCATTATCTTTGTTACCGTCAATCATGCATCGTCTAGAAAACTTGCTGGTGGCAATTGAACTCAAGCAGAGGCTATCTTCTTCATTTCCAGAGGGACATCAAGTTTCTGCCTACAGAATTCTGGAAGCTCTCACTACGGAGAAGTGCCAGGAGTGCCTTTCCCTTGAAAGGCTTGAAATACTCGGTGATGTTTTTCTGAAATATGCAATTACACGACATGTGTTTCTTAAGCATGATCGCCTTGATGAAGGAGGGCTGACAGGAAAGCGTTCCGAGGTTGTAAACAATTCCAATTTGTGCAAGCTAGCAATTAGCCGCAATTTGCAGGCCTATATACGTGACCAGGCATTTGATCCCAGCGAGTTCTTTCCTCTAGGCCGTCCTTGTTTAAGATACTGTAACAAAGAAACACAGGCTACCATTCATTCTCAAATTTCAAACTCTGATACAGATCAGGGGAAAGTTACTGAAGCTCGATGTAGTAAAAATCATCACTGGTTGCATAAGAAAACGATTGCAGATGTAGTTGAAGCTCTTGTAGGTGCATTTTTAGTGGACAGTGGTTTTAAAGCTGCAACTGCATTTCTAAGATGGATTGGCATACAAGTGGAATTTGAAGCTTCAGAAGTGGTCAATGTATGTACAGCAAGTATTAGCTACCTTCCACTTTCTTCTCTTGTGGATGTTCCCTCGTTGGAAGATAATTTAGGACATTGGTTCCTTTATAAAGGTCTGCTTCTACAGGCTCTAGTACATCCTTCTTATAGCAATCATGGTGGAGGCTGCTATCAGAGACTGGAGTTCCTTGGGGATGCTGTCTTGGATTATTTAATTACATCATATTTGTACTCAGTTTATCCAAAATTGAAGCCTGGACAACTGACAGATTTGAGATCAATGTTTGTGAACAATAAAGCATTTGCTAATGTTGCTGGAGCTCGCTCCTTTGATAAATTTCTTATATGCGATTCGAGCAGTCTGTCGGATTCAGTAAAAGAGTATGTGGACTTCCTTAAATCTCCTGAATTTCGTAATGGTTCTTCTGAGGGGCCAAAATGTCCGAAGGCACTTGGTGACATGGTTGAATCTTGTATTGGTGCCATTCTCCTTGACTCAGGCTTCAATTTGAAGAGCATTTGGACTATTATGTTGTCTTTTTTGGATCCAATCATTAATTTTCCATGGTTGCAGCTTAGTCCTATTAGGGAACTGCAAGAGCTTTGCCAGTTTTGTAATTTGAATTTAGAATTTCAGACATCAAAAAAGGAGGGTTTGTTCTTGGTTGAAGCCAGAGCCAGCAGTAATGATATTTGTGCAACTGCTTCCATGAAGAACATCAGCAGAAAAGATGCTGTTATAAGGACTTCGAGAATAGTATGTGCAAAATTGAAGGCCCAAGGATGCCTGCTGAAGTCCAAATCTTTGGAGGAAGTAGTAAAGTCTAGCCAAAAGATGGAAGCTAAACTGATTGGCTATGATGAAACTCCCATAAATGTTACTCCCCCTGCAGTGACTGGAAATAAAAAGAATGTGCCGAGCAGCTTTAACCCCGATTCAAGGATAGTTCCTGTCAGCAGACAGGCTTATTCTTCAACCTTTTCCTCAAAAACCTATTCTCACAGTTCTGGTGGATCTTGCACAAGAACAGCAAGATCACGATTGTATCAAGTCTGTGCTGCAAATTGCTGGAAGCCCCCTTCTTTTGAATGTTGTCAAGAGGACGGAGCAGGCCACTTAAAGCTATTTACTTATAAGGTTGTAGTGAAGATCGAAGATGCCCCAGATCTGATTATAGAAAGCGTTGGAGTACCTCAGTCGAAGAAACGAGATGCAGCTGATAATGCAGCCGAAGGTGCACTGTGGTACCTAAAACAAGAAGGGTACCTTCTCAAGAACGATTGA 4620 0.4093 MPEEEGSRMDKFSTSDSMSVGCTDHVKSVSGEVKTDKDPRTVARKYQLELCEKALRENVIVWLGTGCGKTHIAVLLMYEMGHLIRKPKKNIFVFLAPTVALVQQQAKVIEDSLDFKVQCYCGSSKSLKSRQDWDSELNEYEVFVMTPQILFHCLSHCYIKMDSIELLIFDECHHAQVNSNHPYAEIMKVFYKPNGGKLPRIFGMTASPVVGKGASNPTNLPKTINSLEHILDAKVYSVENKEELDSVVATPVLVMTSLDWKIFVTIVRALLAWWLPDPSQGASSTPTSLLFYHLTCFVYGGNETDPFFIDFLREPIFSRKLLCLIGILSSFRLEPTTKCIIFVNRIVTARCLSYILQKLKILSSWKSGFLVGIHSGMKSMSRKSTKTVLDKFRSGESNLLVATKVGEEGLDIQTCSLVIRFDLPETVASFIQSRGRARMPQSQYAFLVNSGNTKDMNLIESFKRNEEQINFEVAIRTSDEMLSSSQERVYKVDSSGATVSSGYSISLLHQYCAKLPHDEYFDPKPMFFYFDDLGGTVCGITFPCNAPINQIISDPQSSMEAAKKDACLKAIEELHKIGALNDFLLPGKEETNKQEVVIDSDIDRYKEGSSRGELYEMLVPSTLQNAWTENDSPLFLNSYFIEFKPEPKDRDYKKFGLFIKTCLPSEAERMELDLHLARGRSVMTKFVPSGLAEFHGDQIKMAHHFQEMFLKIILDRSDFIPEYVTLGKTDSLQARLSTFYLLLPVILNEHESKMMVDWEILRRCLSSPMFRHPAAAHEIFISNEYIQLANGHRSMRDVENSLIYAPHKKAFYLITNVVHEKSGLSPLKDSAAFTHVDHFRERFSIDLKYPGQPLLRAKPLFSLHNLLHNRKSEDRAELQELEEYFIYLPPELCELKIIGFSKDIASSLSLLPSIMHRLENLLVAIELKQRLSSSFPEGHQVSAYRILEALTTEKCQECLSLERLEILGDVFLKYAITRHVFLKHDRLDEGGLTGKRSEVVNNSNLCKLAISRNLQAYIRDQAFDPSEFFPLGRPCLRYCNKETQATIHSQISNSDTDQGKVTEARCSKNHHWLHKKTIADVVEALVGAFLVDSGFKAATAFLRWIGIQVEFEASEVVNVCTASISYLPLSSLVDVPSLEDNLGHWFLYKGLLLQALVHPSYSNHGGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMFVNNKAFANVAGARSFDKFLICDSSSLSDSVKEYVDFLKSPEFRNGSSEGPKCPKALGDMVESCIGAILLDSGFNLKSIWTIMLSFLDPIINFPWLQLSPIRELQELCQFCNLNLEFQTSKKEGLFLVEARASSNDICATASMKNISRKDAVIRTSRIVCAKLKAQGCLLKSKSLEEVVKSSQKMEAKLIGYDETPINVTPPAVTGNKKNVPSSFNPDSRIVPVSRQAYSSTFSSKTYSHSSGGSCTRTARSRLYQVCAANCWKPPSFECCQEDGAGHLKLFTYKVVVKIEDAPDLIIESVGVPQSKKRDAADNAAEGALWYLKQEGYLLKND* 1540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01431 1539 Pfam Helicase conserved C-terminal domain 326 438 IPR001650 -
Pte10g01431 1539 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 91 454 IPR027417 -
Pte10g01431 1539 ProSiteProfiles Ribonuclease III family domain profile. 924 1094 IPR000999 GO:0004525|GO:0006396
Pte10g01431 1539 SUPERFAMILY RNase III domain-like 945 1108 IPR036389 GO:0004525|GO:0006396
Pte10g01431 1539 SUPERFAMILY PAZ domain 796 895 IPR036085 GO:0005515
Pte10g01431 1539 SMART helicmild6 350 440 IPR001650 -
Pte10g01431 1539 SMART ultradead3 39 241 IPR014001 -
Pte10g01431 1539 ProSiteProfiles PAZ domain profile. 796 897 IPR003100 GO:0005515
Pte10g01431 1539 SUPERFAMILY dsRNA-binding domain-like 1261 1348 - -
Pte10g01431 1539 Gene3D - 1462 1531 - -
Pte10g01431 1539 Pfam Ribonuclease III domain 962 1094 IPR000999 GO:0004525|GO:0006396
Pte10g01431 1539 Pfam Ribonuclease III domain 1170 1279 IPR000999 GO:0004525|GO:0006396
Pte10g01431 1539 SMART riboneu5 946 1114 IPR000999 GO:0004525|GO:0006396
Pte10g01431 1539 SMART riboneu5 1150 1302 IPR000999 GO:0004525|GO:0006396
Pte10g01431 1539 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 50 226 IPR014001 -
Pte10g01431 1539 ProSitePatterns Ribonuclease III family signature. 1170 1178 IPR000999 GO:0004525|GO:0006396
Pte10g01431 1539 SMART PAZ_2_a_3 774 923 IPR003100 GO:0005515
Pte10g01431 1539 CDD SF2_C_dicer 313 448 - -
Pte10g01431 1539 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1455 1530 - -
Pte10g01431 1539 Gene3D Ribonuclease III domain 939 1107 IPR036389 GO:0004525|GO:0006396
Pte10g01431 1539 Gene3D Ribonuclease III domain 1130 1299 IPR036389 GO:0004525|GO:0006396
Pte10g01431 1539 FunFam Endoribonuclease dicer-like protein 38 271 - -
Pte10g01431 1539 CDD DSRM_DCL_plant 1464 1531 - -
Pte10g01431 1539 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 320 482 IPR001650 -
Pte10g01431 1539 PANTHER DICER-RELATED 57 1374 - -
Pte10g01431 1539 CDD RIBOc 946 1112 IPR000999 GO:0004525|GO:0006396
Pte10g01431 1539 Gene3D Dicer dimerisation domain 500 598 IPR038248 -
Pte10g01431 1539 Gene3D - 314 473 IPR027417 -
Pte10g01431 1539 FunFam Endoribonuclease dicer-like 1 1129 1299 - -
Pte10g01431 1539 FunFam Endoribonuclease dicer-like 1 499 595 - -
Pte10g01431 1539 SUPERFAMILY RNase III domain-like 1136 1300 IPR036389 GO:0004525|GO:0006396
Pte10g01431 1539 Gene3D paz domain 783 895 - -
Pte10g01431 1539 Gene3D - 41 272 IPR027417 -
Pte10g01431 1539 SUPERFAMILY dsRNA-binding domain-like 1454 1533 - -
Pte10g01431 1539 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 504 594 IPR005034 GO:0016891
Pte10g01431 1539 SMART DRBM_3 1456 1530 IPR014720 -
Pte10g01431 1539 SMART DRBM_3 1306 1370 IPR014720 -
Pte10g01431 1539 CDD DEXHc_dicer 43 239 - -
Pte10g01431 1539 Pfam PAZ domain 795 919 IPR003100 GO:0005515
Pte10g01431 1539 ProSiteProfiles Ribonuclease III family domain profile. 1135 1279 IPR000999 GO:0004525|GO:0006396
Pte10g01431 1539 CDD RIBOc 1151 1299 IPR000999 GO:0004525|GO:0006396
Pte10g01431 1539 FunFam Endoribonuclease dicer-like 1 311 474 - -
Pte10g01431 1539 Pfam Type III restriction enzyme, res subunit 49 208 IPR006935 GO:0003677|GO:0005524|GO:0016787
Pte10g01431 1539 Pfam Dicer dimerisation domain 504 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01431 Pte-Chr10 32355026 32372998 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01431 337 462 Eukaryotic Initiation Factors Gene Family AT3G19760 32.031 3.66e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01431 K11592 - qsa:O6P43_003025 1613.2