Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pte10g01431 | ATGCCGGAGGAAGAAGGCTCACGCATGGACAAATTCAGTACCTCTGATTCTATGTCAGTTGGCTGTACCGATCACGTGAAATCCGTCTCAGGAGAGGTGAAAACTGACAAGGATCCTAGAACGGTTGCCAGAAAGTATCAGCTGGAGTTATGCGAGAAAGCTTTGCGAGAAAATGTAATTGTTTGGTTGGGTACAGGCTGCGGTAAAACGCACATTGCCGTGCTGCTTATGTACGAGATGGGTCACTTGATAAGGAAGCCTAAGAAAAACATTTTTGTTTTTCTTGCTCCTACAGTTGCTCTAGTTCAGCAGCAAGCAAAGGTTATAGAAGACTCACTTGATTTTAAAGTTCAATGTTATTGCGGGAGTTCCAAGAGCTTGAAAAGTCGTCAAGATTGGGACAGCGAGCTTAATGAATATGAGGTTTTTGTTATGACCCCTCAGATATTATTTCACTGCTTATCTCACTGCTACATCAAGATGGACTCAATTGAGCTTTTGATATTTGATGAATGCCACCATGCCCAAGTCAACAGCAACCATCCTTATGCCGAAATTATGAAAGTTTTCTATAAACCCAATGGTGGAAAGCTTCCCCGTATATTTGGCATGACTGCATCTCCAGTTGTAGGAAAAGGTGCTTCTAATCCTACAAACCTTCCCAAAACTATCAATAGTCTTGAACATATACTTGATGCTAAGGTTTATTCAGTTGAAAACAAAGAAGAATTGGATAGTGTTGTGGCAACTCCTGTGCTGGTGATGACCTCCTTGGATTGGAAAATATTTGTGACCATAGTCAGGGCATTATTAGCTTGGTGGCTTCCAGATCCTTCACAAGGGGCAAGCAGTACGCCAACATCTCTTCTGTTTTATCATTTGACTTGTTTTGTGTATGGTGGCAATGAAACTGATCCCTTCTTTATAGACTTCTTAAGGGAACCCATCTTCTCACGGAAGCTTTTATGCCTTATTGGAATTCTTTCCTCTTTTAGATTAGAACCAACTACAAAATGTATTATATTCGTCAATAGAATTGTTACCGCTAGATGCTTATCATACATCCTACAAAAGCTTAAGATCCTGTCGTCATGGAAGAGTGGTTTCCTTGTAGGAATCCACTCTGGAATGAAGAGTATGTCTCGGAAGAGCACGAAAACTGTTCTTGATAAGTTCCGTTCTGGAGAGTCGAATCTATTGGTTGCAACTAAAGTGGGTGAGGAAGGGCTGGACATTCAGACATGTTCGCTTGTGATAAGGTTTGATCTTCCAGAAACAGTTGCCAGCTTCATACAGTCAAGAGGTCGTGCACGTATGCCTCAGTCTCAATACGCGTTTCTGGTGAACAGTGGCAACACCAAGGATATGAACTTAATTGAAAGTTTCAAGAGGAATGAAGAGCAAATTAATTTTGAAGTTGCTATCAGGACATCTGATGAGATGTTGTCAAGTTCTCAGGAAAGAGTATACAAGGTTGATTCATCTGGTGCTACTGTCAGTTCCGGTTATAGCATCTCCTTGCTTCACCAGTACTGTGCGAAACTTCCTCATGATGAGTATTTTGACCCCAAACCCATGTTTTTCTACTTTGATGATTTGGGAGGAACAGTCTGCGGCATAACTTTTCCATGCAATGCTCCGATAAATCAAATTATAAGTGATCCTCAATCATCAATGGAGGCTGCCAAAAAGGATGCTTGTCTGAAAGCAATTGAAGAATTACATAAAATTGGTGCCTTAAATGATTTTCTGTTGCCCGGGAAAGAAGAGACAAACAAACAGGAAGTAGTTATTGATTCTGATATTGACAGATATAAAGAGGGCAGTTCTCGAGGAGAATTATATGAGATGTTAGTTCCTTCCACCCTTCAAAATGCTTGGACAGAGAATGACAGTCCTCTTTTTCTTAACTCTTACTTCATAGAGTTTAAGCCTGAACCAAAGGATAGGGACTATAAAAAGTTTGGTTTATTTATAAAGACATGTCTCCCCTCTGAGGCTGAAAGGATGGAGCTTGACCTTCATTTGGCTCGTGGGAGATCAGTGATGACCAAATTTGTACCATCTGGGCTTGCAGAATTCCATGGCGATCAGATTAAAATGGCTCATCATTTTCAGGAAATGTTCCTAAAGATCATCCTTGACAGATCAGACTTTATTCCCGAATATGTAACTTTGGGGAAAACTGACTCTCTGCAAGCAAGATTATCAACCTTCTATTTGTTGCTTCCTGTTATTCTGAATGAACATGAAAGCAAGATGATGGTAGACTGGGAGATACTAAGAAGATGTCTATCTTCACCTATGTTCAGGCATCCTGCTGCTGCGCATGAGATTTTTATTTCCAACGAGTACATCCAACTTGCCAATGGTCATCGAAGCATGAGAGACGTGGAAAATAGTTTGATATATGCCCCACATAAGAAGGCATTTTACCTTATCACTAATGTGGTTCATGAGAAGAGTGGTCTTAGTCCCTTAAAAGACTCTGCTGCTTTCACCCATGTAGACCACTTCAGAGAAAGGTTCTCCATTGATCTGAAGTATCCTGGCCAACCTCTATTACGTGCTAAACCACTCTTCTCTCTGCACAACTTGCTTCACAACCGAAAGTCAGAGGATAGAGCAGAACTACAAGAGCTTGAAGAATATTTCATTTATTTGCCTCCTGAGCTTTGTGAATTGAAGATAATTGGCTTTTCAAAAGATATTGCTAGTTCATTATCTTTGTTACCGTCAATCATGCATCGTCTAGAAAACTTGCTGGTGGCAATTGAACTCAAGCAGAGGCTATCTTCTTCATTTCCAGAGGGACATCAAGTTTCTGCCTACAGAATTCTGGAAGCTCTCACTACGGAGAAGTGCCAGGAGTGCCTTTCCCTTGAAAGGCTTGAAATACTCGGTGATGTTTTTCTGAAATATGCAATTACACGACATGTGTTTCTTAAGCATGATCGCCTTGATGAAGGAGGGCTGACAGGAAAGCGTTCCGAGGTTGTAAACAATTCCAATTTGTGCAAGCTAGCAATTAGCCGCAATTTGCAGGCCTATATACGTGACCAGGCATTTGATCCCAGCGAGTTCTTTCCTCTAGGCCGTCCTTGTTTAAGATACTGTAACAAAGAAACACAGGCTACCATTCATTCTCAAATTTCAAACTCTGATACAGATCAGGGGAAAGTTACTGAAGCTCGATGTAGTAAAAATCATCACTGGTTGCATAAGAAAACGATTGCAGATGTAGTTGAAGCTCTTGTAGGTGCATTTTTAGTGGACAGTGGTTTTAAAGCTGCAACTGCATTTCTAAGATGGATTGGCATACAAGTGGAATTTGAAGCTTCAGAAGTGGTCAATGTATGTACAGCAAGTATTAGCTACCTTCCACTTTCTTCTCTTGTGGATGTTCCCTCGTTGGAAGATAATTTAGGACATTGGTTCCTTTATAAAGGTCTGCTTCTACAGGCTCTAGTACATCCTTCTTATAGCAATCATGGTGGAGGCTGCTATCAGAGACTGGAGTTCCTTGGGGATGCTGTCTTGGATTATTTAATTACATCATATTTGTACTCAGTTTATCCAAAATTGAAGCCTGGACAACTGACAGATTTGAGATCAATGTTTGTGAACAATAAAGCATTTGCTAATGTTGCTGGAGCTCGCTCCTTTGATAAATTTCTTATATGCGATTCGAGCAGTCTGTCGGATTCAGTAAAAGAGTATGTGGACTTCCTTAAATCTCCTGAATTTCGTAATGGTTCTTCTGAGGGGCCAAAATGTCCGAAGGCACTTGGTGACATGGTTGAATCTTGTATTGGTGCCATTCTCCTTGACTCAGGCTTCAATTTGAAGAGCATTTGGACTATTATGTTGTCTTTTTTGGATCCAATCATTAATTTTCCATGGTTGCAGCTTAGTCCTATTAGGGAACTGCAAGAGCTTTGCCAGTTTTGTAATTTGAATTTAGAATTTCAGACATCAAAAAAGGAGGGTTTGTTCTTGGTTGAAGCCAGAGCCAGCAGTAATGATATTTGTGCAACTGCTTCCATGAAGAACATCAGCAGAAAAGATGCTGTTATAAGGACTTCGAGAATAGTATGTGCAAAATTGAAGGCCCAAGGATGCCTGCTGAAGTCCAAATCTTTGGAGGAAGTAGTAAAGTCTAGCCAAAAGATGGAAGCTAAACTGATTGGCTATGATGAAACTCCCATAAATGTTACTCCCCCTGCAGTGACTGGAAATAAAAAGAATGTGCCGAGCAGCTTTAACCCCGATTCAAGGATAGTTCCTGTCAGCAGACAGGCTTATTCTTCAACCTTTTCCTCAAAAACCTATTCTCACAGTTCTGGTGGATCTTGCACAAGAACAGCAAGATCACGATTGTATCAAGTCTGTGCTGCAAATTGCTGGAAGCCCCCTTCTTTTGAATGTTGTCAAGAGGACGGAGCAGGCCACTTAAAGCTATTTACTTATAAGGTTGTAGTGAAGATCGAAGATGCCCCAGATCTGATTATAGAAAGCGTTGGAGTACCTCAGTCGAAGAAACGAGATGCAGCTGATAATGCAGCCGAAGGTGCACTGTGGTACCTAAAACAAGAAGGGTACCTTCTCAAGAACGATTGA | 4620 | 0.4093 | MPEEEGSRMDKFSTSDSMSVGCTDHVKSVSGEVKTDKDPRTVARKYQLELCEKALRENVIVWLGTGCGKTHIAVLLMYEMGHLIRKPKKNIFVFLAPTVALVQQQAKVIEDSLDFKVQCYCGSSKSLKSRQDWDSELNEYEVFVMTPQILFHCLSHCYIKMDSIELLIFDECHHAQVNSNHPYAEIMKVFYKPNGGKLPRIFGMTASPVVGKGASNPTNLPKTINSLEHILDAKVYSVENKEELDSVVATPVLVMTSLDWKIFVTIVRALLAWWLPDPSQGASSTPTSLLFYHLTCFVYGGNETDPFFIDFLREPIFSRKLLCLIGILSSFRLEPTTKCIIFVNRIVTARCLSYILQKLKILSSWKSGFLVGIHSGMKSMSRKSTKTVLDKFRSGESNLLVATKVGEEGLDIQTCSLVIRFDLPETVASFIQSRGRARMPQSQYAFLVNSGNTKDMNLIESFKRNEEQINFEVAIRTSDEMLSSSQERVYKVDSSGATVSSGYSISLLHQYCAKLPHDEYFDPKPMFFYFDDLGGTVCGITFPCNAPINQIISDPQSSMEAAKKDACLKAIEELHKIGALNDFLLPGKEETNKQEVVIDSDIDRYKEGSSRGELYEMLVPSTLQNAWTENDSPLFLNSYFIEFKPEPKDRDYKKFGLFIKTCLPSEAERMELDLHLARGRSVMTKFVPSGLAEFHGDQIKMAHHFQEMFLKIILDRSDFIPEYVTLGKTDSLQARLSTFYLLLPVILNEHESKMMVDWEILRRCLSSPMFRHPAAAHEIFISNEYIQLANGHRSMRDVENSLIYAPHKKAFYLITNVVHEKSGLSPLKDSAAFTHVDHFRERFSIDLKYPGQPLLRAKPLFSLHNLLHNRKSEDRAELQELEEYFIYLPPELCELKIIGFSKDIASSLSLLPSIMHRLENLLVAIELKQRLSSSFPEGHQVSAYRILEALTTEKCQECLSLERLEILGDVFLKYAITRHVFLKHDRLDEGGLTGKRSEVVNNSNLCKLAISRNLQAYIRDQAFDPSEFFPLGRPCLRYCNKETQATIHSQISNSDTDQGKVTEARCSKNHHWLHKKTIADVVEALVGAFLVDSGFKAATAFLRWIGIQVEFEASEVVNVCTASISYLPLSSLVDVPSLEDNLGHWFLYKGLLLQALVHPSYSNHGGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSMFVNNKAFANVAGARSFDKFLICDSSSLSDSVKEYVDFLKSPEFRNGSSEGPKCPKALGDMVESCIGAILLDSGFNLKSIWTIMLSFLDPIINFPWLQLSPIRELQELCQFCNLNLEFQTSKKEGLFLVEARASSNDICATASMKNISRKDAVIRTSRIVCAKLKAQGCLLKSKSLEEVVKSSQKMEAKLIGYDETPINVTPPAVTGNKKNVPSSFNPDSRIVPVSRQAYSSTFSSKTYSHSSGGSCTRTARSRLYQVCAANCWKPPSFECCQEDGAGHLKLFTYKVVVKIEDAPDLIIESVGVPQSKKRDAADNAAEGALWYLKQEGYLLKND* | 1540 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pte10g01431 | 1539 | Pfam | Helicase conserved C-terminal domain | 326 | 438 | IPR001650 | - | |
Pte10g01431 | 1539 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 91 | 454 | IPR027417 | - | |
Pte10g01431 | 1539 | ProSiteProfiles | Ribonuclease III family domain profile. | 924 | 1094 | IPR000999 | GO:0004525|GO:0006396 | |
Pte10g01431 | 1539 | SUPERFAMILY | RNase III domain-like | 945 | 1108 | IPR036389 | GO:0004525|GO:0006396 | |
Pte10g01431 | 1539 | SUPERFAMILY | PAZ domain | 796 | 895 | IPR036085 | GO:0005515 | |
Pte10g01431 | 1539 | SMART | helicmild6 | 350 | 440 | IPR001650 | - | |
Pte10g01431 | 1539 | SMART | ultradead3 | 39 | 241 | IPR014001 | - | |
Pte10g01431 | 1539 | ProSiteProfiles | PAZ domain profile. | 796 | 897 | IPR003100 | GO:0005515 | |
Pte10g01431 | 1539 | SUPERFAMILY | dsRNA-binding domain-like | 1261 | 1348 | - | - | |
Pte10g01431 | 1539 | Gene3D | - | 1462 | 1531 | - | - | |
Pte10g01431 | 1539 | Pfam | Ribonuclease III domain | 962 | 1094 | IPR000999 | GO:0004525|GO:0006396 | |
Pte10g01431 | 1539 | Pfam | Ribonuclease III domain | 1170 | 1279 | IPR000999 | GO:0004525|GO:0006396 | |
Pte10g01431 | 1539 | SMART | riboneu5 | 946 | 1114 | IPR000999 | GO:0004525|GO:0006396 | |
Pte10g01431 | 1539 | SMART | riboneu5 | 1150 | 1302 | IPR000999 | GO:0004525|GO:0006396 | |
Pte10g01431 | 1539 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 50 | 226 | IPR014001 | - | |
Pte10g01431 | 1539 | ProSitePatterns | Ribonuclease III family signature. | 1170 | 1178 | IPR000999 | GO:0004525|GO:0006396 | |
Pte10g01431 | 1539 | SMART | PAZ_2_a_3 | 774 | 923 | IPR003100 | GO:0005515 | |
Pte10g01431 | 1539 | CDD | SF2_C_dicer | 313 | 448 | - | - | |
Pte10g01431 | 1539 | Pfam | double strand RNA binding domain from DEAD END PROTEIN 1 | 1455 | 1530 | - | - | |
Pte10g01431 | 1539 | Gene3D | Ribonuclease III domain | 939 | 1107 | IPR036389 | GO:0004525|GO:0006396 | |
Pte10g01431 | 1539 | Gene3D | Ribonuclease III domain | 1130 | 1299 | IPR036389 | GO:0004525|GO:0006396 | |
Pte10g01431 | 1539 | FunFam | Endoribonuclease dicer-like protein | 38 | 271 | - | - | |
Pte10g01431 | 1539 | CDD | DSRM_DCL_plant | 1464 | 1531 | - | - | |
Pte10g01431 | 1539 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 320 | 482 | IPR001650 | - | |
Pte10g01431 | 1539 | PANTHER | DICER-RELATED | 57 | 1374 | - | - | |
Pte10g01431 | 1539 | CDD | RIBOc | 946 | 1112 | IPR000999 | GO:0004525|GO:0006396 | |
Pte10g01431 | 1539 | Gene3D | Dicer dimerisation domain | 500 | 598 | IPR038248 | - | |
Pte10g01431 | 1539 | Gene3D | - | 314 | 473 | IPR027417 | - | |
Pte10g01431 | 1539 | FunFam | Endoribonuclease dicer-like 1 | 1129 | 1299 | - | - | |
Pte10g01431 | 1539 | FunFam | Endoribonuclease dicer-like 1 | 499 | 595 | - | - | |
Pte10g01431 | 1539 | SUPERFAMILY | RNase III domain-like | 1136 | 1300 | IPR036389 | GO:0004525|GO:0006396 | |
Pte10g01431 | 1539 | Gene3D | paz domain | 783 | 895 | - | - | |
Pte10g01431 | 1539 | Gene3D | - | 41 | 272 | IPR027417 | - | |
Pte10g01431 | 1539 | SUPERFAMILY | dsRNA-binding domain-like | 1454 | 1533 | - | - | |
Pte10g01431 | 1539 | ProSiteProfiles | Dicer double-stranded RNA-binding fold domain profile. | 504 | 594 | IPR005034 | GO:0016891 | |
Pte10g01431 | 1539 | SMART | DRBM_3 | 1456 | 1530 | IPR014720 | - | |
Pte10g01431 | 1539 | SMART | DRBM_3 | 1306 | 1370 | IPR014720 | - | |
Pte10g01431 | 1539 | CDD | DEXHc_dicer | 43 | 239 | - | - | |
Pte10g01431 | 1539 | Pfam | PAZ domain | 795 | 919 | IPR003100 | GO:0005515 | |
Pte10g01431 | 1539 | ProSiteProfiles | Ribonuclease III family domain profile. | 1135 | 1279 | IPR000999 | GO:0004525|GO:0006396 | |
Pte10g01431 | 1539 | CDD | RIBOc | 1151 | 1299 | IPR000999 | GO:0004525|GO:0006396 | |
Pte10g01431 | 1539 | FunFam | Endoribonuclease dicer-like 1 | 311 | 474 | - | - | |
Pte10g01431 | 1539 | Pfam | Type III restriction enzyme, res subunit | 49 | 208 | IPR006935 | GO:0003677|GO:0005524|GO:0016787 | |
Pte10g01431 | 1539 | Pfam | Dicer dimerisation domain | 504 | 590 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pte10g01431 | Pte-Chr10 | 32355026 | 32372998 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pte10g01431 | 337 | 462 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 32.031 | 3.66e-09 | 58.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pte10g01431 | K11592 | - | qsa:O6P43_003025 | 1613.2 |