Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01423 ATGGCTTTTCAAGAACATTTGCTTAATCAGATCGCGTTTCAAACTTTCAGTGACGACCCAGATACACACTCTCAGTTGAGTCGAAGTAGAGACATACTGATGCAAAGGTTGCGCCCACTTAACATGAACAACTCGATTAATCTCAGGCAGCAGGATTTCTTGCACCTGCAGAATGACCATGTTCCGGACATGAGTAAGAGCAGCAAAGGAGGAGATCGGAATCGGACTGAGAGTAGCTCTGAGTCAGAGGATTTGATGAGTGCGTACAAGGCAGACATTTTAGCACACCCTTTGTATGAGCAGCTGCAGGCGGTTCATGTTTCGTGTTTGAGGATTGCCACCCCGGTTGACCAGTTGCCAAGGATCGATGGGCAGCTGGCACAGTCTCGGAGCGTGGTGGACAAGTACTCTTCTGTCGTTGGCAGTGGTGTGGTAGATGACAAGGAGCTTGATCAGTTCATGACACATTATGTTCTACTACTCTCCGCCTTTAAAGAACAATTGCAACAACATGTCCGTGTTCATGCTATGGAAGCAGTTATGGCTTGTTGGGAGCTCGAACAATCCCTACAAAGTTTGACTGGTGTATCTCCTGGAGAAGGCACTGGTGCAACAATGTCTGATGATGAGGATGACCAGGCAGACAGTGACATCAACTTATGTGAAGGCAATTTGGATGGACCTGACATCCTTGGCTTTGGTCCTCTCCTTCCTACCGAAACTGAGAGGTCTTTGATGGAGCGTGTGCGGCAAGAATTGAAGCATGACTTAAAACAGGGTTACAAGGAGAAAATTGTCGACATAAGAGAAGAAATTCTAAGGAAAAGAAGAGCAGGGAAGCTCCCTGGAGATACCACCTCCCTCTTAAAAGCTTGGTGGCAATCACATTCCAAGTGGCCATACCCAACTGAGGAAGACAAGGCAAGGCTAGTACAGGAAACTGGCTTGCAATTGAAGCAAATAAATAACTGGTTCATTAATCAAAGGAAAAGAAACTGGCATAGCAATCCTTCATCTTCTACTACCACAAAAAGCAAACGCAAGAGTAATACAGGTGAATCCAGCAACCAGAGCTTCATGTGA 1083 0.4598 MAFQEHLLNQIAFQTFSDDPDTHSQLSRSRDILMQRLRPLNMNNSINLRQQDFLHLQNDHVPDMSKSSKGGDRNRTESSSESEDLMSAYKADILAHPLYEQLQAVHVSCLRIATPVDQLPRIDGQLAQSRSVVDKYSSVVGSGVVDDKELDQFMTHYVLLLSAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGTGATMSDDEDDQADSDINLCEGNLDGPDILGFGPLLPTETERSLMERVRQELKHDLKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTTTKSKRKSNTGESSNQSFM* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01423 360 MobiDBLite consensus disorder prediction 60 83 - -
Pte10g01423 360 Pfam ELK domain 252 273 IPR005539 GO:0003677
Pte10g01423 360 Pfam KNOX1 domain 88 129 IPR005540 GO:0003677|GO:0005634
Pte10g01423 360 ProSiteProfiles ELK domain profile. 252 272 IPR005539 GO:0003677
Pte10g01423 360 SUPERFAMILY Homeodomain-like 274 338 IPR009057 -
Pte10g01423 360 CDD homeodomain 275 336 IPR001356 GO:0003677
Pte10g01423 360 SMART HOX_1 274 339 IPR001356 GO:0003677
Pte10g01423 360 FunFam homeobox protein knotted-1-like 3 isoform X1 273 334 - -
Pte10g01423 360 SMART KNOX2_2 140 195 IPR005541 GO:0003677|GO:0005634
Pte10g01423 360 MobiDBLite consensus disorder prediction 194 214 - -
Pte10g01423 360 MobiDBLite consensus disorder prediction 65 80 - -
Pte10g01423 360 Pfam Homeobox KN domain 292 331 IPR008422 GO:0003677|GO:0006355
Pte10g01423 360 ProSiteProfiles 'Homeobox' domain profile. 272 335 IPR001356 GO:0003677
Pte10g01423 360 MobiDBLite consensus disorder prediction 329 360 - -
Pte10g01423 360 SMART KNOX1_2 87 131 IPR005540 GO:0003677|GO:0005634
Pte10g01423 360 Pfam KNOX2 domain 144 194 IPR005541 GO:0003677|GO:0005634
Pte10g01423 360 SMART ELK_2 252 273 IPR005539 GO:0003677
Pte10g01423 360 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 87 350 - -
Pte10g01423 360 Gene3D - 278 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01423 Pte-Chr10 32318531 32325149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01423 63 357 Homeobox Transcription Factor Family AT5G11060 75.920 8.82e-166 467
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pte10g01423 KNOX2 1.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01423 - - pcin:129320455 508.834