Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01411 ATGGGAAAGCAAAGTGAAAAGAAAAAGAAACAAGTACGAGAAGCTTCTGGCGATGCTGCTGGAAGCCCAAAAAAGTCTGAATTCAACAGTCCCAAAACATATGACAATGATACACAGGTGTTCATATCCATGGCACAAGTGCTAAAAGATGAAGGGAACAAGCTTTTTCAAAAGAGGGACTTGGAAGGAGCTATGCTGAAATTTGAAAAGGCTATTAAGTTGCTTCCAAAAAATCATATAGATGTGTCCCATGTTCGGAGTAATATGGCAGCATGCTACATGCAGCTGGGAATAAGTGAGTATCCGAGGGCAATCCAGGAGTGCAATTTAGCTCTACAAGTTGCACCTAAGTACAGTAAAGCATTGTTGAAGAGGGCAAGATGTTATGAAGCTTTAAATAGACTTGATTTAGCTTTCAGAGATGTTAGTACTGTTGTAAACATGGAGCCTAATAATGTTATGGCATTAGAGATTCTAGAAAGGGTGAAATCAGCACTTCAGAGTAGAGGATTGAAGGTCACTGGTTCTAGCATTGAGTTGCCTCCTGATTATGTTGAACCGGCTTATGCTGCAGCTCCTGCTAAAGAAGTGAAAGATAAGGCACGTAAGAAGAAGAATAGCAAAACTAAGGCAAACAAAATTGAGAGCACAATTGATTACAACAAGGATAATGGTAAGAATGAACAGAAGGCAGCCAAGGAGATATATGAAGAGAAGGCTGAGAATGGTTTTGAAAATTGTGGCACAGAGGACAGACTTGATGAGAAGAATGATGAGGTCAAGGAAGTTGTGGAAGAAAAAACTAAGACCAAGAGGGACCAAGAAGGTGATGTACCTAAGAAAAATGTCAAATTGATTTTTGGTGAAGATATAAGATGGGCTCTGGTTCCTGTTAATTGCAGTCTCCTGCAGCTCCGACAAGTTATCCACGAACGTTTTCCAAGGTCTGGAGCTGTTCTTGTTAAATACAGGGACCAAGAAGGTGACTTAGTTACTATTACTTCTGACGAAGAGCTAAGAATGGCTGAAGGGTCTGCAGGATCAGAGGGTTGTCTTCGGCTCTACGTTGTAGAAATTATTCCTGAAAACGATCCATATTTTGTAATGCTGAATCATGGAAAAGGGAAGCCCCTACTACAACATGATAGTGTTCCCCAGAATGGTTGTCTGGTAAAAGGAAAGGAATTGAAGGTTTCATCTTGTGTTGAGGATTGGACAATTCATTTTGCCCAGCTGTTTAAGAACCACATTGGTTCTGAATTTTATAGATATTTGAACATTCATGAAGTTGGTTATGAACTGTATTACGAGGCTTTGGAAGAGATGGTTACAAGTGAAGAAGCGCAAGGCCTTTTTGATACGGCAGGAGAGAAGTTCCAAGAGATGGGAGCACTGGCATTGCTCAACTCTGGAAATGTTCACATGTCCATGGCAAGGAAGAGGGTCTTTTTCATAGATAATTCTTGTAAAGAAAATCTAACTGAACGAATCAGAAGTTTTTATGATTGGGCACAGAAAGAATATATGAAAGCTGGAGACAAATATAAAGAAGCTGTCACAATAAAAGAAGACTTTTACGAAGGCTTTCTAGCATTGGGTCAGCAACAGTTTGAACGGGCCAAATTATCTTGGTATCATGCAATCAGCAAAAACGTTGACCCAGAAGCATTGCCTTCAACTGAGGTGTTGCAGCTTTATAACAGTGCAGAAGACAACGTCAAAAAAGGAATGCAGTTATTGGAAGAATCGGAAGAAATGAAGGCAAGGGAGACCACCAATTCGGAAGATTCTAAATGTCAGCTGCAGAAAATTGGGTGGAAATGTTTATTTAAAAATATATCACCAGATGAAACCTCTAAATATGAAGCATGTATGAGGTCTCAGATGAATCTTTTGTGTGGCTCCATGTTATATGAGCGTTCAATGGTGGAATTCAAGTTAGGGTTACCAGCTTGGCAGGAATCCCTGCAGGCTGCAGTTGAAAAGTTCAAACTTACAGGAGCTTCTCCAAATGACATAGCTGTGATGATGAAGAATCATTCTTCAAATAGTACTTCTATAGAAGCTGGTCTAGGCTCCAAAGTTGAAGATGTAATAAAGGCCAGGAATGAAATGTTCGATGCCAGAAAGTTGCAGACAGGTATCCTGTCATTTCGCTTGGAGCCCTTATTTAGGAGGCGAGTGTCAAAAGTTTATCACGCATTGGAGCTTTCGTGA 2217 0.4023 MGKQSEKKKKQVREASGDAAGSPKKSEFNSPKTYDNDTQVFISMAQVLKDEGNKLFQKRDLEGAMLKFEKAIKLLPKNHIDVSHVRSNMAACYMQLGISEYPRAIQECNLALQVAPKYSKALLKRARCYEALNRLDLAFRDVSTVVNMEPNNVMALEILERVKSALQSRGLKVTGSSIELPPDYVEPAYAAAPAKEVKDKARKKKNSKTKANKIESTIDYNKDNGKNEQKAAKEIYEEKAENGFENCGTEDRLDEKNDEVKEVVEEKTKTKRDQEGDVPKKNVKLIFGEDIRWALVPVNCSLLQLRQVIHERFPRSGAVLVKYRDQEGDLVTITSDEELRMAEGSAGSEGCLRLYVVEIIPENDPYFVMLNHGKGKPLLQHDSVPQNGCLVKGKELKVSSCVEDWTIHFAQLFKNHIGSEFYRYLNIHEVGYELYYEALEEMVTSEEAQGLFDTAGEKFQEMGALALLNSGNVHMSMARKRVFFIDNSCKENLTERIRSFYDWAQKEYMKAGDKYKEAVTIKEDFYEGFLALGQQQFERAKLSWYHAISKNVDPEALPSTEVLQLYNSAEDNVKKGMQLLEESEEMKARETTNSEDSKCQLQKIGWKCLFKNISPDETSKYEACMRSQMNLLCGSMLYERSMVEFKLGLPAWQESLQAAVEKFKLTGASPNDIAVMMKNHSSNSTSIEAGLGSKVEDVIKARNEMFDARKLQTGILSFRLEPLFRRRVSKVYHALELS* 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01411 738 SMART tpr_5 83 118 IPR019734 GO:0005515
Pte10g01411 738 SMART tpr_5 119 152 IPR019734 GO:0005515
Pte10g01411 738 SMART tpr_5 45 78 IPR019734 GO:0005515
Pte10g01411 738 MobiDBLite consensus disorder prediction 1 15 - -
Pte10g01411 738 MobiDBLite consensus disorder prediction 195 222 - -
Pte10g01411 738 ProSiteProfiles PB1 domain profile. 280 359 IPR000270 GO:0005515
Pte10g01411 738 SMART PB1_new 280 359 IPR000270 GO:0005515
Pte10g01411 738 PANTHER PROTEIN CLMP1 1 736 IPR044517 -
Pte10g01411 738 ProSiteProfiles TPR repeat profile. 45 78 IPR019734 GO:0005515
Pte10g01411 738 Pfam PB1 domain 282 358 IPR000270 GO:0005515
Pte10g01411 738 SUPERFAMILY TPR-like 37 166 IPR011990 GO:0005515
Pte10g01411 738 CDD PB1 283 356 - -
Pte10g01411 738 Gene3D - 279 356 - -
Pte10g01411 738 MobiDBLite consensus disorder prediction 1 33 - -
Pte10g01411 738 Coils Coil 566 586 - -
Pte10g01411 738 SUPERFAMILY CAD & PB1 domains 280 349 - -
Pte10g01411 738 Coils Coil 253 273 - -
Pte10g01411 738 Gene3D Tetratricopeptide repeat domain 42 172 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01411 Pte-Chr10 32181132 32183420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01411 33 152 Calmodulin-binding Proteins AT3G25230 29.457 3.82e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01411 K26538 - jre:108991006 852.047