Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01390 ATGGCGAGGGAGAAGATTCAGATCAAGAAGATCGATAACGCTACAGCAAGGCAGGTTACGTTTTCCAAGAGGCGAAGAGGGCTTTTCAAGAAGGCTGAGGAGCTTGCAGTTCTTTGTGATGCTGATGTTGCTCTCATCATCTTCTCCTCCACGGGGAAGCTGTTTGAGTACTCTAGCTCAAGCATGAAGGAAATACTAGAAAGGCATAATTTGCACTCAAAGAATCTTGCTAAACTGGAACAACCTTCTCTGGAACTTCAGTTAGTCGAAAACAGCAACTACACTAGATTGAGCAAGGAAGTTGCTGAGAAGAGCCACCGACTGAGGCAGATGAGAGGAGAAGAGCTACAAGGACTAAATATAGATGAACTGCAGCAGCTAGAGAAGTCTCTTGAATCAGGACTAAGTCGTATAATCGAGAGAAAGGGAGAAAAGATCATGAAGGAGATCAGTGATCTTCAGCAAAAGGGAACACAATTGTTGGAAGAGAATGAGCGATTAAAACAGCAGGTTGCGGATATATCCAATGGCAGAAGATACTGTGGTGCTGACTCCGAGATGATTATAACCGAGGAAGGTCTGTCATCAGAGTCAGTCACAAATATCTCCAACTCCAATTGGCCTCCCCAAGACGATGACAGTTCGGATACATCTCTTAAGTTGGGGCTGCCATATAATGAGTGA 684 0.4444 MAREKIQIKKIDNATARQVTFSKRRRGLFKKAEELAVLCDADVALIIFSSTGKLFEYSSSSMKEILERHNLHSKNLAKLEQPSLELQLVENSNYTRLSKEVAEKSHRLRQMRGEELQGLNIDELQQLEKSLESGLSRIIERKGEKIMKEISDLQQKGTQLLEENERLKQQVADISNGRRYCGADSEMIITEEGLSSESVTNISNSNWPPQDDDSSDTSLKLGLPYNE* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01390 227 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pte10g01390 227 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte10g01390 227 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Pte10g01390 227 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte10g01390 227 Pfam K-box region 92 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte10g01390 227 MobiDBLite consensus disorder prediction 199 227 - -
Pte10g01390 227 SUPERFAMILY SRF-like 3 81 IPR036879 GO:0003677|GO:0046983
Pte10g01390 227 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pte10g01390 227 FunFam Transcription factor, MADS-box 13 83 - -
Pte10g01390 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 166 - -
Pte10g01390 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pte10g01390 227 Coils Coil 150 170 - -
Pte10g01390 227 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Pte10g01390 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte10g01390 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte10g01390 227 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01390 Pte-Chr10 31780145 31784257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01390 1 225 MADS-box Gene Family AT2G22540 71.008 3.47e-117 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pte10g01390 K-box 2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01390 - - qsu:112018313 375.17