Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01388 ATGCAACAACTTGGAGGCTATTACAAATCTAAGAAGCCTGTCATAAGACATAGCTTTTCCCAAGGATTTTTCACGAATGCATTCAGAAGCTCATTCTCAAAATCAAGATCGAAGGCAGAGATCAGATCACTTGCTGCTAAGAAACACAGCGAAGCTGAAAGGAGACGTAGAATGCGAATCAATGGCCAATATGCCACCTTGCGCAACATACTCCCTAACTTAGTCAAAATGGACAAGGCATCCGTATTGGGAGAAACTATACGTCGATTAAGGGAACTTAAGAAGCAAACATCGGAACTGGAATCAAGCAGAGGTGCTAGCAATGAAGAAATGGTGTTGCCTAGTGAGTCAGACAAATTAATTTTGGAAGAGTATGATGATAAGAAGGGCATGAAGGCCACTTTGAGTTGTGAGGATAGACCAGAGTTGATGTCAGCCTTGGCAAGGGCGATTAAGTCAGTGAATGCTAAGGTTGTGAAGGCTGAGATGGTGACGGTGGGAGGAAGAACTAGAAGTGTATTGTTTGTGGAAGGGTTGAATGGTGGGAGTGAAGGGATGCCGAGTTTAAGAAGAGCACTTAAAGTTGTCATACAGAAGCCTGATTTTCGAGGCATGAGTAGGATGATGGTACAGATGTGA 639 0.4335 MQQLGGYYKSKKPVIRHSFSQGFFTNAFRSSFSKSRSKAEIRSLAAKKHSEAERRRRMRINGQYATLRNILPNLVKMDKASVLGETIRRLRELKKQTSELESSRGASNEEMVLPSESDKLILEEYDDKKGMKATLSCEDRPELMSALARAIKSVNAKVVKAEMVTVGGRTRSVLFVEGLNGGSEGMPSLRRALKVVIQKPDFRGMSRMMVQM* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01388 212 PANTHER TRANSCRIPTION FACTOR BHLH30 28 200 IPR045847 GO:0003700|GO:0006355
Pte10g01388 212 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 44 93 IPR011598 GO:0046983
Pte10g01388 212 SUPERFAMILY ACT-like 134 202 IPR045865 -
Pte10g01388 212 Pfam Helix-loop-helix DNA-binding domain 47 93 IPR011598 GO:0046983
Pte10g01388 212 Coils Coil 83 110 - -
Pte10g01388 212 Gene3D - 131 203 - -
Pte10g01388 212 SMART finulus 50 99 IPR011598 GO:0046983
Pte10g01388 212 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 111 IPR036638 GO:0046983
Pte10g01388 212 CDD ACT_UUR-ACR-like 134 199 - -
Pte10g01388 212 Gene3D - 39 105 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01388 Pte-Chr10 31774213 31774977 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01388 39 199 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 43.787 1.29e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte10g01388 HLH 4.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01388 - - cave:132186457 239.195