Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g01363 ATGTCTTTGGTTTATTGTCGAATCAGCGGCGGAGCTGTAGTTCTGAGTAGCCCTTGTTTGCTACCATCTTCTGCTACTCCTTCTATACTATACCAGAATGAGTTTCAAAAGCAATCAACTCCGACCCCAGTTGCAGAATCCTCATCTGGAAGTAAAATAAACCCATCAATTCTTGTTATTATAGTTGTACTGGCTGTCGTAGTCTTCATATCTGGTCTGCTTCAATTGCTTGTTAGATACCTCATGAGGAATAGATCTTCTTCGTCAATATCTGAATCCAGTAGATACCCAGATATATCAGAATCTGATGCTTACCAAAGACAACTACAACAGCTTTTCCAGCTACATGATTCAGGCTTAGACCAAACTTTCATAGATGCACTGCCTGTCTTTTTGTACAAGGAGATAATCGGTTTGAAAGAGCCTTTTGATTGTGCTGTTTGCCTTTGTGAATTCACAGAACTTGACAAACTCAGGTTACTTCCCTTGTGCAACCATGCTTTTCACTTAGACTGTATCGACACATGGTTGATGTCCAATTCAACATGCCCTCTTTGCAGAGGAACACTATATGCTCCTGGACTTGTCATTGAAAACCCAGTTTTTGATTTCGAGGATCCTATCGAAAATATCTGCTCAGGAGTAGAAAGACAAGGAGAAACCAGCAACAGTAACTTGGCTGCAAGGAGATGCTATTCAATGGGGTCATGCCAATATGTGGTTGCTGATTCAGATTTGCAAGTAGTCGTGTGTCCCAATAGAGGTGAAACTAGCAGACATTTGAAAGATAGACCAATCCAAAATGAAGATTCCTCAACCAATTACGAGGATGCTGAAGGGAAAAAGCTGAAGGTTGGAAGTAAAGGTGAAAGCTTTTCTGTTTCCAAGGTCTGGCTATGGACTAAGAAGGGTAAATCCTCAAATCCTTCGGAATCCCAATTGGGAGCTTCTGCATTTGTTGCCGGTTTGCCGTTGACTAATAGAACACAGCATACACTTAGGTAA 1005 0.4129 MSLVYCRISGGAVVLSSPCLLPSSATPSILYQNEFQKQSTPTPVAESSSGSKINPSILVIIVVLAVVVFISGLLQLLVRYLMRNRSSSSISESSRYPDISESDAYQRQLQQLFQLHDSGLDQTFIDALPVFLYKEIIGLKEPFDCAVCLCEFTELDKLRLLPLCNHAFHLDCIDTWLMSNSTCPLCRGTLYAPGLVIENPVFDFEDPIENICSGVERQGETSNSNLAARRCYSMGSCQYVVADSDLQVVVCPNRGETSRHLKDRPIQNEDSSTNYEDAEGKKLKVGSKGESFSVSKVWLWTKKGKSSNPSESQLGASAFVAGLPLTNRTQHTLR* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g01363 334 CDD RING-H2_EL5-like 144 187 - -
Pte10g01363 334 Pfam Ring finger domain 144 187 IPR001841 -
Pte10g01363 334 FunFam RING-H2 finger protein ATL46 107 192 - -
Pte10g01363 334 SUPERFAMILY RING/U-box 124 193 - -
Pte10g01363 334 SMART ring_2 145 186 IPR001841 -
Pte10g01363 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 192 IPR013083 -
Pte10g01363 334 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 48 298 - -
Pte10g01363 334 ProSiteProfiles Zinc finger RING-type profile. 145 187 IPR001841 -
Pte10g01363 334 MobiDBLite consensus disorder prediction 258 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g01363 Pte-Chr10 31533792 31535877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g01363 47 192 C3H Transcription Factor Family AT2G18650 58.503 4.30e-44 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g01363 - - qsa:O6P43_025322 404.831